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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | Nin-like | ||||||||
Protein Properties | Length: 585aa MW: 62136.6 Da PI: 6.3306 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.1 | 6.4e-27 | 353 | 400 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sl++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ EMT25644 353 VSLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 400 799******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.699 | 336 | 422 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.6E-25 | 353 | 400 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 9.81E-19 | 473 | 545 | No hit | No description |
PROSITE profile | PS51745 | 16.651 | 478 | 572 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.5E-18 | 478 | 572 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.2E-23 | 479 | 545 | No hit | No description |
CDD | cd06407 | 1.51E-34 | 479 | 571 | No hit | No description |
Pfam | PF00564 | 1.4E-12 | 479 | 548 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MPAWSGSSAA SASGSATATT ASGSGGGRGG GHDEADGGSG AVKERIARAL RLYKESSGAG 60 EDGGGALVQV WAPARDGERR RVLATRGQPF VLPSRCRRLL QYRTVSLTHV FAVGGGQGRR 120 VTWEERGLPG RVFEARAPEW TPNVQFYGTG EYARMSYALI YDIQASLALP ILDPAHPRRC 180 LAAVSLRGSE ICHPVPPTED AYPLAHYARM HGLAGCLAVP LRLPQSAMDV GDDDGQVEEE 240 CVVLEFFLPP DCRSAGEQKA MVDAVAATIR KECSGNHLEA TSDLQDLSLE AVLADADTAH 300 ELNDRGDYDT NDSDEEDGDQ AGGVHGADQS GAEDRVPQPE MKKKTGRKAG RPVSLKELQG 360 YFSGSLKDAA RSLGVCPTTM KRICRQHGIS RWPFRKISKV NRALGKIRAI ESADCSPKPT 420 AAASSTSRRA PAPHLPCLSS ALGEDTSSQG SSQDPPPLTK TTMRKSLLWR SNGAEGELVT 480 IKANYRGDII RFRVSCSAGV AAVKEEVAKR LGLDAGAFDV KYLDDDHEWV LLSCDADFQE 540 CLDVAPGLPA SATMAGGAGV VSPVVRLMVQ EVVADNHRSS CGSSD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364314 | 0.0 | AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153726.1 | 0.0 | protein NLP3-like isoform X2 | ||||
TrEMBL | M8BUM1 | 0.0 | M8BUM1_AEGTA; Uncharacterized protein | ||||
STRING | EMT25644 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 6e-35 | Nin-like family protein |