PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25632 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 620aa MW: 67973.6 Da PI: 5.9537 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 6e-19 | 33 | 91 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ ++r++L +++ +++ rq+kvWFqNrR ++k+ EMT25632 33 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 91 5678****************************************************996 PP | |||||||
2 | START | 161 | 9e-51 | 170 | 377 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ + g g+++l +++++a EMT25632 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYMQMYA 269 6899******************************************************9999999999.****************9999************ PP XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197 +++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s+++ ++k+++ EMT25632 270 PTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTT 370 ********************************9999998888899******************************************************** PP HHTXXXX CS START 198 atlqrqc 204 a+l++ + EMT25632 371 AALRHIR 377 ***9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-19 | 14 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.677 | 28 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-16 | 30 | 96 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-16 | 32 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.05E-17 | 33 | 93 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 34 | 91 | IPR001356 | Homeobox domain |
CDD | cd14686 | 9.03E-6 | 85 | 124 | No hit | No description |
PROSITE profile | PS50848 | 27.274 | 160 | 388 | IPR002913 | START domain |
CDD | cd08875 | 5.67E-74 | 164 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 5.6E-22 | 168 | 355 | IPR023393 | START-like domain |
SMART | SM00234 | 7.0E-38 | 169 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.53E-37 | 170 | 381 | No hit | No description |
Pfam | PF01852 | 1.0E-48 | 170 | 377 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MAAAAVAAMR CGSGSGSDGG GGGYDKGGMD SGKYVRYTPE QVEALERVYA ECPKPTSTRR 60 QQLLRECPIL SNIEPRQIKV WFQNRRCRDK QRKESSRLQA VNRKLSAMNK LLMEENERLQ 120 KQVSQLVHEN AYMKQQLQNP SLANDTSCES NVTTPNPLRD ASNPAGLLAI AEETLTEFLS 180 KATGTAVDWV PMPGMKPGPD SFGIVAVSHG CRGVAARACG LVNLEPTKIV EILKDRPSWF 240 RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL 300 SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES 360 SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN DAISGFNDDG 420 WSVMAGDGIE DVIIACNSKK IRSNNTAPNA FIAPGGVICA KASMLLQSVP PAVLVRFLRE 480 HRSEWADYNF DAYSASALKS SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ 540 ALDEGLLSRD IHLLQFCTGL DEKSMGSCFQ LVFAPIDELF PDDAPLISSG FRVIPLDMKT 600 VEYPVSLIYC YSEIQDTTFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362009 | 0.0 | AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174778.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | M8CES0 | 0.0 | M8CES0_AEGTA; Homeobox-leucine zipper protein HOX9 | ||||
STRING | EMT25632 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |