PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25632
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 620aa    MW: 67973.6 Da    PI: 5.9537
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25632genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-193391357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  EMT25632 33 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 91
              5678****************************************************996 PP

2START1619e-511703772204
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l +++++a
  EMT25632 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYMQMYA 269
               6899******************************************************9999999999.****************9999************ PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s+++ ++k+++
  EMT25632 270 PTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTT 370
               ********************************9999998888899******************************************************** PP

               HHTXXXX CS
     START 198 atlqrqc 204
               a+l++ +
  EMT25632 371 AALRHIR 377
               ***9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-191491IPR009057Homeodomain-like
PROSITE profilePS5007115.6772892IPR001356Homeobox domain
SMARTSM003894.3E-163096IPR001356Homeobox domain
SuperFamilySSF466891.5E-163294IPR009057Homeodomain-like
CDDcd000868.05E-173393No hitNo description
PfamPF000461.9E-163491IPR001356Homeobox domain
CDDcd146869.03E-685124No hitNo description
PROSITE profilePS5084827.274160388IPR002913START domain
CDDcd088755.67E-74164380No hitNo description
Gene3DG3DSA:3.30.530.205.6E-22168355IPR023393START-like domain
SMARTSM002347.0E-38169379IPR002913START domain
SuperFamilySSF559614.53E-37170381No hitNo description
PfamPF018521.0E-48170377IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAAAAVAAMR CGSGSGSDGG GGGYDKGGMD SGKYVRYTPE QVEALERVYA ECPKPTSTRR  60
QQLLRECPIL SNIEPRQIKV WFQNRRCRDK QRKESSRLQA VNRKLSAMNK LLMEENERLQ  120
KQVSQLVHEN AYMKQQLQNP SLANDTSCES NVTTPNPLRD ASNPAGLLAI AEETLTEFLS  180
KATGTAVDWV PMPGMKPGPD SFGIVAVSHG CRGVAARACG LVNLEPTKIV EILKDRPSWF  240
RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL  300
SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES  360
SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN DAISGFNDDG  420
WSVMAGDGIE DVIIACNSKK IRSNNTAPNA FIAPGGVICA KASMLLQSVP PAVLVRFLRE  480
HRSEWADYNF DAYSASALKS SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ  540
ALDEGLLSRD IHLLQFCTGL DEKSMGSCFQ LVFAPIDELF PDDAPLISSG FRVIPLDMKT  600
VEYPVSLIYC YSEIQDTTFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174778.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLM8CES00.0M8CES0_AEGTA; Homeobox-leucine zipper protein HOX9
STRINGEMT256320.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein