PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT25279 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 223aa MW: 25628.2 Da PI: 10.1321 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 6.2e-15 | 135 | 222 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k +t+s+v+ +l lpk+f++++ k ++ +tl de+g + + ++ rk + l++ Wk F+ ++L +gD +vF+++++++f+lvv EMT25279 135 FVKPMTQSHVTGGFWLGLPKQFCTKYLPK--RDEWITLVDEKGTESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIHQTRFKLVV 222 89************************433..4568***************444444....9999*********************999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-18 | 128 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-20 | 129 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-22 | 133 | 222 | No hit | No description |
PROSITE profile | PS50863 | 9.305 | 135 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 135 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-11 | 135 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAGAVAYEEQ RRRQVEENRR KLDQLNLHHL SAALRDAAVA PRPSPVKSAK RKPRGPPPGD 60 APPRRSGRVA SLPEQPNYRF EDTYADIEKK IRGSRTHSTR TDLIDRVYAT EEARTYATDM 120 AEELQAKLDP RHPSFVKPMT QSHVTGGFWL GLPKQFCTKY LPKRDEWITL VDEKGTESDS 180 YYLARKWGLS AQWKAFAINH KLVDGDCLVF ERIHQTRFKL VVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357200 | 0.0 | AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185096.1 | 1e-164 | B3 domain-containing protein Os06g0194400-like isoform X2 | ||||
Swissprot | Q69V36 | 6e-87 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | M8BTL7 | 1e-165 | M8BTL7_AEGTA; B3 domain-containing protein | ||||
STRING | EMT25279 | 1e-166 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-48 | B3 family protein |
Publications ? help Back to Top | |||
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