PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT25175

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 648aa MW: 72046.6 Da PI: 6.1318

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT25175	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	351.7	1.2e-107	270	642	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+av+++d + a++lL++++ +a pdgd +qRla++f+e+L+ar+a+++ + ++l +++ s ++ l+a++l+ + + k+s+l N++ EMT25175 270 LRTLLIHCAQAVATDDRRSATELLKQIKLHARPDGDGTQRLAHCFAEGLQARMAGTGGLVHQSLMATRIS---AVDMLKAYQLYMAAICFKKVSFLFSNST 367 6789*************************************************888888777777776...9*********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I++a g++++HiiD++i++G+QWp++l+ +++Rp+gpp +RiTg++ p++g +e++eetg+rL+k+A+e++vpfe++++++ ++e+l+ e+L+++p+E EMT25175 368 IYNASLGKKKIHIIDYGIQYGFQWPCFLRRISTRPGGPPDVRITGIDLPQPGfrPTERIEETGRRLKKYAHEFNVPFEYRAIATAKMESLRKEDLKIDPDE 468 ***********************************************9*************************9999************ PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +l+Vn+ +q ++l+desv les+rd vLk +++++P+ ++++ + + +++ F++rf e l yysalfd l+++ pr++e+r+ +E+ +lgr++ nv+ace EMT25175 469 VLIVNSLFQFKNLMDESVVLESPRDVVLKNIRKMQPHTFIHAIVNGSFSAPFFVTRFREVLFYYSALFDVLDTTTPRDNEQRMLIEQNILGRAALNVIACE 569 ************************************************************************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g++r+er et+++W+ r ++aG+k +pl+ ++ + a+ +++++ + + ++ ++++l++gWk+r L+++S W+ EMT25175 570 GTDRVERPETYKQWQVRNQRAGLKLLPLNPEVIELARDKVKNCYHKDFVIDIDQHWLLQGWKGRILYAISTWT 642 ****************************************889***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.32	244	622	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.1E-105	270	642	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MEEDIDDKFF YDFPDNPALI EAQQPFLEIL SDPSSNSTSD DSNNRAVSPC SPSDASVGNA 60 AQLPPTPAAV DSYDRFQFEP VDLDPAAFFG GGANSDLMSS AFLKGMQEAN KFLPSQDKLV 120 IDLEASSGQF FKGVEEGNKF LPREDKLVAG FNGHAAPAPA PAVLSVKKEE AVDAVSANSG 180 GGRGRKNPYH DDELEQEGGR SSKQSALGDD VSAREMFDRM LMPSDEMCIV QMQNLRIAMQ 240 EAVAKNDSGG GKGANGKGRG RRGGSDVVDL RTLLIHCAQA VATDDRRSAT ELLKQIKLHA 300 RPDGDGTQRL AHCFAEGLQA RMAGTGGLVH QSLMATRISA VDMLKAYQLY MAAICFKKVS 360 FLFSNSTIYN ASLGKKKIHI IDYGIQYGFQ WPCFLRRIST RPGGPPDVRI TGIDLPQPGF 420 RPTERIEETG RRLKKYAHEF NVPFEYRAIA TAKMESLRKE DLKIDPDEVL IVNSLFQFKN 480 LMDESVVLES PRDVVLKNIR KMQPHTFIHA IVNGSFSAPF FVTRFREVLF YYSALFDVLD 540 TTTPRDNEQR MLIEQNILGR AALNVIACEG TDRVERPETY KQWQVRNQRA GLKLLPLNPE 600 VIELARDKVK NCYHKDFVID IDQHWLLQGW KGRILYAIST WTANDASS

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MEEDIDDKFF YDFPDNPALI EAQQPFLEIL SDPSSNSTSD DSNNRAVSPC SPSDASVGNA  60
AQLPPTPAAV DSYDRFQFEP VDLDPAAFFG GGANSDLMSS AFLKGMQEAN KFLPSQDKLV  120
IDLEASSGQF FKGVEEGNKF LPREDKLVAG FNGHAAPAPA PAVLSVKKEE AVDAVSANSG  180
GGRGRKNPYH DDELEQEGGR SSKQSALGDD VSAREMFDRM LMPSDEMCIV QMQNLRIAMQ  240
EAVAKNDSGG GKGANGKGRG RRGGSDVVDL RTLLIHCAQA VATDDRRSAT ELLKQIKLHA  300
RPDGDGTQRL AHCFAEGLQA RMAGTGGLVH QSLMATRISA VDMLKAYQLY MAAICFKKVS  360
FLFSNSTIYN ASLGKKKIHI IDYGIQYGFQ WPCFLRRIST RPGGPPDVRI TGIDLPQPGF  420
RPTERIEETG RRLKKYAHEF NVPFEYRAIA TAKMESLRKE DLKIDPDEVL IVNSLFQFKN  480
LMDESVVLES PRDVVLKNIR KMQPHTFIHA IVNGSFSAPF FVTRFREVLF YYSALFDVLD  540
TTTPRDNEQR MLIEQNILGR AALNVIACEG TDRVERPETY KQWQVRNQRA GLKLLPLNPE  600
VIELARDKVK NCYHKDFVID IDQHWLLQGW KGRILYAIST WTANDASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-44	274	641	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357996	0.0	AK357996.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1066L11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160240.1	0.0	scarecrow-like protein 34
TrEMBL	A0A453JWU4	0.0	A0A453JWU4_AEGTS; Uncharacterized protein
STRING	EMT25175	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-161	SCARECROW-like 14