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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT24918 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 713aa MW: 77495.5 Da PI: 6.6975 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.2 | 1.6e-07 | 260 | 293 | 3 | 33 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...T CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...k 33 rW+ E+e l ++v+q+G+ +Wk I + + EMT24918 260 RWSSVEEETLRKGVEQFGSSNWKDILIHNPdafI 293 9************************998775554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-6 | 254 | 297 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.46E-7 | 255 | 298 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.48E-7 | 261 | 290 | No hit | No description |
SuperFamily | SSF51971 | 1.53E-8 | 378 | 556 | No hit | No description |
Pfam | PF01266 | 2.1E-12 | 380 | 689 | IPR006076 | FAD dependent oxidoreductase |
Gene3D | G3DSA:3.30.9.10 | 1.2E-8 | 518 | 638 | No hit | No description |
SuperFamily | SSF51971 | 1.53E-8 | 626 | 692 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MEEEDHQDGG GARLRDVEGD IVDLRAPVPH LAARVNGLRK MSDPFSPSPA FHGLTAKSLM 60 TSGTFIWDSR FLGLFYFVHH SCAWNDPTAP QGYFVPIIDG TILELTAGEE KTREILSKIE 120 DRISTPQVHK VIHDLKSSCA DLHNVVDDPL PAAKAAADKV LAARMDKAVH INDEFNNHGA 180 NCSVAGPSAV NDQGETLRKG TPSSLMDWNP TAQSLLWEDS LDPDGSRSQS HRPHLPSPRR 240 ISVSPLQVAE NKARRRRARR WSSVEEETLR KGVEQFGSSN WKDILIHNPD AFIGRTTAPL 300 GGPIPPSPER RMPSLFPVGP IPAENSAAAP PPAVLPISLN SPDLVGVRLL SPRDSQILPK 360 QLQVPLMLVQ QSPKDSRVSV DVYDENGVGG GASGVSGGLL HPYSPKAKLL WRGGEFWKES 420 MDLLRSAEKA NGTAGSDGAS RDDEALIWRR QSVFPCIYLS LSRGILRPPT TEKAADILLE 480 ALFSACQNVA NEASASSSEQ KEFNLYNEHI DNLHQFSGDY DAVIICLGGK ASSLPELTNK 540 LPLRTCRGVI AEFRLPSDTV EKYGSRSPSI LSDAWLAFQG PRTVSVGSTW QWKSDNHDPS 600 VSNEEARSAM EELLPKASAV YPGISKWDYV RARAGIRAMP PLTANGSLPL LGCLNDVIGE 660 RSNSAFWLVG GLGARGLLYH GLAGKLTAKA VISSDENMIP SEFTCWKAVK ASR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375507 | 0.0 | AK375507.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3096E16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M8BT03 | 0.0 | M8BT03_AEGTA; Uncharacterized protein | ||||
STRING | EMT24918 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3154 | 30 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 2e-07 | TRF-like 5 |