PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT24705

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bZIP

Protein Properties

Length: 294aa MW: 32644 Da PI: 6.3705

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT24705	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.7	1.4e-09	48	87	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKk ++++Le +L + ++ EMT24705 48 KTLRRLAQNREAARKSRLRKKSYVQQLESSKLKLAQLEQE 87 7889************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-6	44	107	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.335	46	90	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-6	48	89	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-7	48	91	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-7	49	93	No hit	No description
PROSITE pattern	PS00036	0	51	66	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-34	130	205	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEMFNLNFMF QPEPLESCPL EQGQSGGAIM ASNSSDRSDR SDKPLDQKTL RRLAQNREAA 60 RKSRLRKKSY VQQLESSKLK LAQLEQELQK ARQQGIFISS SGDQTHAMSG NGAMTFDLEY 120 TRWLEDQNKQ INELRTAVNA HASDSDLRLI VDGIMAHYDE IFKVKGVAAK ADVFHILSGM 180 WKTPAERCFL WLGGFRPSEL LKLLVNHLEP LTEQQMLGLT NLQQSSQQAE DALSQGMEAL 240 QQSLAETLAG SLGSSAGSSG NVANYMGQMA MAMGKLGTLE NFLRQAGLFP FFQS

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424316	0.0	JX424316.1 Triticum monococcum TGA-type basic leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189386.1	0.0	transcription factor TGA2.1
Refseq	XP_020189387.1	0.0	transcription factor TGA2.1
Swissprot	Q7X993	1e-161	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A3B6D6N8	0.0	A0A3B6D6N8_WHEAT; Uncharacterized protein
TrEMBL	M8BI86	0.0	M8BI86_AEGTA; Putative Transcription factor HBP-1b(C1)
STRING	EMT24705	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP486	38	185

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	1e-118	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]