PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT24611

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 367aa MW: 40238.2 Da PI: 6.261

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT24611	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.8e-06	206	225	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r n++ H+ EMT24611 206 FVCHVCNKSFNRYNNMQMHM 225 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.79E-5	189	229	No hit	No description
PROSITE profile	PS50157	10.388	206	233	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-5	206	225	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	208	228	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.36E-5	276	310	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGLRTCGAME GEHVVASPFF EWLKPPPASP SSSRSSSTFS SSSSSMASGH QEDRSSVACL 60 PLLRMLEEGK GAGGDHDHPA PPVKEEIMGS GAAEVLGPGV DLNIGLPVGG SCDDDIMEEE 120 SQEEDDDHDC DEEEEEEMDE LEPNHGGCKV EAEEKEKHGE PVVSVEGSNS VSMPEFGVLG 180 AESGVPMSCG YWIPTPAQIL VGPVQFVCHV CNKSFNRYNN MQMHMWGHGR EYRKGPESLK 240 GTQTLALLKL PCYCCAAGCR NSVAHPRARP LKDFRTLQTH YKRKHGARPF RCRRCAKPFA 300 VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGD HLPVALDGAP APPPAPGEDR 360 RIIRFQR

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGLRTCGAME GEHVVASPFF EWLKPPPASP SSSRSSSTFS SSSSSMASGH QEDRSSVACL  60
PLLRMLEEGK GAGGDHDHPA PPVKEEIMGS GAAEVLGPGV DLNIGLPVGG SCDDDIMEEE  120
SQEEDDDHDC DEEEEEEMDE LEPNHGGCKV EAEEKEKHGE PVVSVEGSNS VSMPEFGVLG  180
AESGVPMSCG YWIPTPAQIL VGPVQFVCHV CNKSFNRYNN MQMHMWGHGR EYRKGPESLK  240
GTQTLALLKL PCYCCAAGCR NSVAHPRARP LKDFRTLQTH YKRKHGARPF RCRRCAKPFA  300
VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGD HLPVALDGAP APPPAPGEDR  360
RIIRFQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK359222	0.0	AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182641.1	0.0	protein TRANSPARENT TESTA 1-like
TrEMBL	M8CM99	0.0	M8CM99_AEGTA; Protein TRANSPARENT TESTA 1
STRING	EMT24611	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4472	36	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	4e-92	WIP domain protein 5