PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

EMT24601

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

LBD

Protein Properties

Length: 188aa MW: 20481.6 Da PI: 9.5676

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT24601	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.8	2.9e-41	74	173	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+++++e EMT24601 74 PCAACKLLRRRCAHECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEAERADAASSLVYEANLRLRDPVYGCMGAISMLQQQVNALEAELQAVRAE 173 7**********************************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.359	73	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-41	74	171	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MGRGRPDRWT QGAAGREKRR ERLDEIGKKI KREPDPAAAI AGVVVAVSPT EHHGPRRLGL 60 VGPGIGGAAN IATPCAACKL LRRRCAHECP FAPYFSPHEP HKFAAVHKVF GASNVSKMLL 120 EVPEAERADA ASSLVYEANL RLRDPVYGCM GAISMLQQQV NALEAELQAV RAEIFKHRTR 180 YSCCGYLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-42	74	188	11	120	LOB family transfactor Ramosa2.1
5ly0_B	3e-42	74	188	11	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY795561	0.0	AY795561.1 Triticum aestivum LOB1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158005.1	1e-105	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-64	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M8CM92	1e-135	M8CM92_AEGTA; Uncharacterized protein
STRING	EMT24601	1e-136	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-66	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]