PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24595
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92446.5 Da    PI: 6.0851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24595genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-182380356
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
              k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++ rq+kvWFqNrR ++k
  EMT24595 23 KYVRYTPEQVETLERVYADCPKPTSSRRQQLLRECpilaNIEARQIKVWFQNRRCRDK 80
              5678***************************************************998 PP

2START154.39.9e-491613682204
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W +++++ e+  v+  +  g+++l +++l+a
  EMT24595 161 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRSLEVFTVLPGAngGTIELVYTQLYA 260
               789*******************************************************9999988888.***************98788************ PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++lvp Rdf+++Ry+   ++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h + +++ ++++lr+l++s+++ ++k+++
  EMT24595 261 PTTLVPaRDFWTLRYTTIVEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLEFEAWNIPEVLRPLYESSRVVAQKMTT 361
               ********************************9999999898899******************************************************** PP

               HHTXXXX CS
     START 198 atlqrqc 204
               a+l++ +
  EMT24595 362 AALRHIR 368
               ***9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-18580IPR009057Homeodomain-like
PROSITE profilePS5007115.0621882IPR001356Homeobox domain
SMARTSM003892.0E-152086IPR001356Homeobox domain
SuperFamilySSF466891.11E-142382IPR009057Homeodomain-like
CDDcd000866.99E-162380No hitNo description
PfamPF000461.9E-152480IPR001356Homeobox domain
PROSITE profilePS5084826.466151379IPR002913START domain
CDDcd088759.96E-72155371No hitNo description
SMARTSM002341.5E-36160370IPR002913START domain
SuperFamilySSF559613.98E-36160372No hitNo description
Gene3DG3DSA:3.30.530.204.0E-19160346IPR023393START-like domain
PfamPF018522.0E-46161368IPR002913START domain
PfamPF086701.7E-46700842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAMRGGSSDG GGSDRGAGMD SGKYVRYTPE QVETLERVYA DCPKPTSSRR QQLLRECPIL  60
ANIEARQIKV WFQNRRCRDK LRKESSRLES VNRKVSAMNK LLMEENERLQ KQVSQLVHEN  120
AQVRQQLQNT SMANDASCES NVTTPQNPIR DASNPSGLLS IAEETLTEFL SKATGTAIEW  180
VQMPGMKPGP DSVGIVAISH GCRGVAARAC GLVNLEPTKV VEILKDRPSW FRDCRSLEVF  240
TVLPGANGGT IELVYTQLYA PTTLVPARDF WTLRYTTIVE DGSLVVCERS LSGSGGGPSA  300
ASAQQFVRAE MLPSGYLVRP CDGGGSIVHI VDHLEFEAWN IPEVLRPLYE SSRVVAQKMT  360
TAALRHIRQI AQETSGEVVY ALGRQPAVLR TFSQRLSRGF NDAISGFNDD GWSIMAGDGI  420
EDVVVACNST KKIRNVSNGV NAFEALGGTI CAKASMLLQS VPPAILVRFL REHRSEWADY  480
SMDAYLASAV KTSTCSFPGL RPMRFSGSQI IMPLAHTVEN EEILEVVRLE GQPLSHDEVL  540
LSRDIDMLQL CTGIDEKSVG SSFQLVFAPI DDFPDDAPLV SSGFRVIPLD MKTVKRFHPH  600
YSPVLTFCRT LDLASSLEVG STAAQASGAS PDDCNVRSVL TIAFQFPYEL HLQDSVAAMA  660
RQYVRSIVSA VQRVSIAISP SQSGLNAGQR ILSGLPEAAT LARWICQSYH YHLGVELLTQ  720
SDVAGEALLK MLWHYQDAIL CCSFKEVPVF TFANKAGLDM LETSLVALQD LTLDKIFDEP  780
GRKALFSEIS KLVEEGHVYL PSGVCMSGMG RHVSFDQAVA WKVLGEDSSV HCLALCFVNW  840
SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162053.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLM8BHX30.0M8BHX3_AEGTA; Homeobox-leucine zipper protein HOX10
STRINGEMT245950.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein