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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT24595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 92446.5 Da PI: 6.0851 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 6e-18 | 23 | 80 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 k ++t+eq+e+Le++++ +++p+ ++r++L +++ +++ rq+kvWFqNrR ++k EMT24595 23 KYVRYTPEQVETLERVYADCPKPTSSRRQQLLRECpilaNIEARQIKVWFQNRRCRDK 80 5678***************************************************998 PP | |||||||
2 | START | 154.3 | 9.9e-49 | 161 | 368 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ve+l d++ W +++++ e+ v+ + g+++l +++l+a EMT24595 161 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRSLEVFTVLPGAngGTIELVYTQLYA 260 789*******************************************************9999988888.***************98788************ PP XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197 +++lvp Rdf+++Ry+ ++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h + +++ ++++lr+l++s+++ ++k+++ EMT24595 261 PTTLVPaRDFWTLRYTTIVEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLEFEAWNIPEVLRPLYESSRVVAQKMTT 361 ********************************9999999898899******************************************************** PP HHTXXXX CS START 198 atlqrqc 204 a+l++ + EMT24595 362 AALRHIR 368 ***9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-18 | 5 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.062 | 18 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 20 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-14 | 23 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.99E-16 | 23 | 80 | No hit | No description |
Pfam | PF00046 | 1.9E-15 | 24 | 80 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 26.466 | 151 | 379 | IPR002913 | START domain |
CDD | cd08875 | 9.96E-72 | 155 | 371 | No hit | No description |
SMART | SM00234 | 1.5E-36 | 160 | 370 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.98E-36 | 160 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.0E-19 | 160 | 346 | IPR023393 | START-like domain |
Pfam | PF01852 | 2.0E-46 | 161 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 1.7E-46 | 700 | 842 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence Send to blast |
MAMRGGSSDG GGSDRGAGMD SGKYVRYTPE QVETLERVYA DCPKPTSSRR QQLLRECPIL 60 ANIEARQIKV WFQNRRCRDK LRKESSRLES VNRKVSAMNK LLMEENERLQ KQVSQLVHEN 120 AQVRQQLQNT SMANDASCES NVTTPQNPIR DASNPSGLLS IAEETLTEFL SKATGTAIEW 180 VQMPGMKPGP DSVGIVAISH GCRGVAARAC GLVNLEPTKV VEILKDRPSW FRDCRSLEVF 240 TVLPGANGGT IELVYTQLYA PTTLVPARDF WTLRYTTIVE DGSLVVCERS LSGSGGGPSA 300 ASAQQFVRAE MLPSGYLVRP CDGGGSIVHI VDHLEFEAWN IPEVLRPLYE SSRVVAQKMT 360 TAALRHIRQI AQETSGEVVY ALGRQPAVLR TFSQRLSRGF NDAISGFNDD GWSIMAGDGI 420 EDVVVACNST KKIRNVSNGV NAFEALGGTI CAKASMLLQS VPPAILVRFL REHRSEWADY 480 SMDAYLASAV KTSTCSFPGL RPMRFSGSQI IMPLAHTVEN EEILEVVRLE GQPLSHDEVL 540 LSRDIDMLQL CTGIDEKSVG SSFQLVFAPI DDFPDDAPLV SSGFRVIPLD MKTVKRFHPH 600 YSPVLTFCRT LDLASSLEVG STAAQASGAS PDDCNVRSVL TIAFQFPYEL HLQDSVAAMA 660 RQYVRSIVSA VQRVSIAISP SQSGLNAGQR ILSGLPEAAT LARWICQSYH YHLGVELLTQ 720 SDVAGEALLK MLWHYQDAIL CCSFKEVPVF TFANKAGLDM LETSLVALQD LTLDKIFDEP 780 GRKALFSEIS KLVEEGHVYL PSGVCMSGMG RHVSFDQAVA WKVLGEDSSV HCLALCFVNW 840 SFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162053.1 | 0.0 | homeobox-leucine zipper protein HOX10 | ||||
Swissprot | A2XBL9 | 0.0 | HOX10_ORYSI; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | M8BHX3 | 0.0 | M8BHX3_AEGTA; Homeobox-leucine zipper protein HOX10 | ||||
STRING | EMT24595 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |