PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 307aa MW: 33454.9 Da PI: 9.3981

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT24564	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.8e-11	14	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +k +G g+W++ ++ g + +c++rw +yl EMT24564 14 KGAWTKEEDQRLIAHIKAHGEGCWRSLPKAAGttysyL--Y-LSCRLRWINYL 63 79****************************887552..2.49*****97 PP
2	Myb_DNA-binding	57.7	2.6e-18	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel++++++ lG++ W++Ia +++ gRt++++k++w+++ EMT24564 69 RGNFTDEEDELIIKLHEFLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 113 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.772	9	63	IPR017930	Myb domain
SuperFamily	SSF46689	7.91E-26	13	110	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-8	13	65	IPR001005	SANT/Myb domain
Pfam	PF00249	8.2E-9	14	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-18	15	70	IPR009057	Homeodomain-like
CDD	cd00167	4.73E-8	16	63	No hit	No description
PROSITE profile	PS51294	27.528	64	118	IPR017930	Myb domain
SMART	SM00717	1.6E-17	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-16	69	113	IPR001005	SANT/Myb domain
CDD	cd00167	1.41E-13	71	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-28	71	118	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGRSACCEKA HTNKGAWTKE EDQRLIAHIK AHGEGCWRSL PKAAGTTYSY LYLSCRLRWI 60 NYLRPDLKRG NFTDEEDELI IKLHEFLGNK WSLIAGRLPG RTDNEIKNYW NTHVKRKLLA 120 RGVDPQTHRP LNAGTAAVQG MHTPSSPVVA SGASPHQLAG GSSCSPDASG HSSDADDSVS 180 LPPSLAGNLG VGMIDLNLSI SPPCEPPLSR EADAMPIIKE SKPRFSAFQK LSRCLSHQSM 240 NVYAAISPGP SKDIKGLAVT LHSGKGVDSS IDQRRNVLGQ KTRDPSIPPE KNFVTFSHRG 300 ADQAIKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-27	13	118	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF226140	0.0	KF226140.1 Triticum aestivum cultivar RNIL_Sumai3 R2R3-Myb transcription factor (MybFhb5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201126.1	1e-147	myb-related protein 308-like
Swissprot	P81393	2e-80	MYB08_ANTMA; Myb-related protein 308
TrEMBL	M8BRD9	0.0	M8BRD9_AEGTA; Myb-related protein 308
STRING	EMT24564	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	3e-79	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]