PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24022
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 329aa    MW: 37575.9 Da    PI: 8.8151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24022genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-141221961191
               HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
        B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                ++  l +p +f  eh  +   ++ ++l de+ ++++v +  r +s++  l +GW+eF+ +n+L egD +vF+l++r  f+
  EMT24022 122 QSLTSLHIPAQFSMEHLPD--HGMRMVLVDEEEEEFKVCY--RPHSSS--LVAGWSEFAVDNELVEGDCLVFQLIKRALFK 196
               4445589*****9999533..6789***************..999988..889********************99876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.12E-17109201IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-17110202IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.925112203IPR003340B3 DNA binding domain
CDDcd100175.61E-18114192No hitNo description
SMARTSM010197.5E-10116208IPR003340B3 DNA binding domain
PfamPF023621.9E-11120195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAEANSYEEQ RRRQVEENKR KLEELRLHHL SAAVREAAVK PRLKRKAPKP RDAADDAPPR  60
RSGRIATLPE QPDYRDNVKL GTRKPWQQKE VKPDHAYAIA KAEELQDELG SDYPTFVKPM  120
PQSLTSLHIP AQFSMEHLPD HGMRMVLVDE EEEEFKVCYR PHSSSLVAGW SEFAVDNELV  180
EGDCLVFQLI KRALFKYTSR CASFIFHMKK VPKKCNSFSY EESAEKDGAR YNITQSNTAC  240
EAKWTSHAPV VESRPWVLTS QLSALGTPFR KLCLVIHNTK STYSGQVRTM KMTINEAAGR  300
LLVASCQLLL NFHSSEIRTM SGVKWEAEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3743460.0AK374346.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3061L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158478.11e-144B3 domain-containing protein Os06g0194400-like
SwissprotQ69V368e-63Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM8CAC10.0M8CAC1_AEGTA; B3 domain-containing protein
STRINGEMT240220.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-25B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]