PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT23676

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 1294aa MW: 146666 Da PI: 8.2417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT23676	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.1	2.5e-12	666	709	46	90
FAR1 46 kktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +k++k+r++++ ++t+Ckak+ vk+ dg+wevt+++ +HnH+l+ EMT23676 666 SKKKKKRKRETIKQTQCKAKMLVKLI-DGRWEVTHFVRDHNHPLV 709 22467899999*************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03108	4.3E-13	288	355	IPR004332	Transposase, MuDR, plant
Pfam	PF03101	5.0E-10	665	709	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-11	823	880	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.963	1041	1077	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0027	1052	1079	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.7E-4	1054	1076	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1294 aa Download sequence Send to blast
MSVNFRSMRY RLVAHLDSDY NPVCAQCIDD PKWEIWFHFL ARESVVRRIY QSDISYITLV 60 SLIASEGRGA DDYMYYVVDE KKGIEGLEHV GCEDDVQQML IQLDKEKIVN IRVARADEPS 120 NADENRDSYF AEHGISTQQS CTKLVDATKE RKEELKNNNL QREADLNHFE GDTDVSEFLS 180 DEDGNNVELH TGSSSEEEAA KQNRSMVQKL KAVRNPGPTS RSHHEVEKKE KPDWFPKADE 240 FCFPGDPGIS DEEDEIEGAF KLPSGRKRRL KKMKERVWFN EKLPDPQEQF CKGLCFTNVY 300 VFRDALRDFH IRTLRNFQYQ RNAPDRIIVW CSERAHGCDF YICASKIARE QTFCIKKCDM 360 LHTCGACAEN TKVTTKWLSK SVQPALRDDI RAPVDALIKK TKTKFSVDVS RSVAYRARRK 420 AVDVVQGDHK QQYLRLRDYL QAFLDTNPGS RCIVTTFVDP ENPAPTPRFK YMFYCLAASK 480 EGFLNGCRPF IAFGVVDKED GESWTWFLTQ LRCCIGSGNK FGTYIIISDR QKTSHDGNPM 540 GHDNVVGQSS DRGAPVVVSL QLESHTLDDT GTDANVPGPT RTELGAGAVD GAVQGEEGEN 600 EAGSQPMEPY VGMSFAATSS KSPKLMMEEL RLLLSWTLFQ IQNLLTVMRR WKKEPPIFAE 660 EEAGTSKKKK KRKRETIKQT QCKAKMLVKL IDGRWEVTHF VRDHNHPLVK KPSLSKYLRS 720 HQGISPDEKE FLRILYNCNL TTDCLYCATT QCPVCKKCKV FLKRTYDAYN GRVLRSEMMV 780 PFGPKAITNL CTSFRRDDTK EGDLIETIAH FKDIQKTDPD FFYKELASSF DWVFGAFLEA 840 MDGKPLDNFI IDQDGAMRQS RQNIFPTTVH RCCRWHIMKK AQEKVGWPLC RNPGLSDDFN 900 KCVDFSFTID EFEQNWAGLM MKFFPFLQST QRSEGFNTVL KRYVNPHNSM LNFVKQYEKI 960 QNHILAKEGC NDYRTEHLGI ELWSNFPIEK QAYKTYTRDL YRKFREEFEL IGRYNAFQVG 1020 ADIFELRPNQ EFVAKYGSRN YLVQARVEEG SYLCECCKMD KDGILCCHIL KVFTHIGVDV 1080 MPESGSDPAQ AIVYKHMRAA RTEIGHLNKS KKKKKLTAAT GPSDDGNPRG PPPPPGSNQG 1140 AHHPGDVNPQ GPPPPPGCTR HPPPPPPPRA PPNGPTGSTQ GAHRPGDANP QRPPPPPGPT 1200 SSALRATPNG PTGRTQGAHH PGDRDGPTAP LEAASPAQAS DDFVPRDPPR STTKGRAKSR 1260 RYKSALELHP KKKNKCTQCQ STENIAGVCP LRLL

Sequence ? help Back to Top

Protein Sequence Length: 1294 aa Download sequence Send to blast

MSVNFRSMRY RLVAHLDSDY NPVCAQCIDD PKWEIWFHFL ARESVVRRIY QSDISYITLV  60
SLIASEGRGA DDYMYYVVDE KKGIEGLEHV GCEDDVQQML IQLDKEKIVN IRVARADEPS  120
NADENRDSYF AEHGISTQQS CTKLVDATKE RKEELKNNNL QREADLNHFE GDTDVSEFLS  180
DEDGNNVELH TGSSSEEEAA KQNRSMVQKL KAVRNPGPTS RSHHEVEKKE KPDWFPKADE  240
FCFPGDPGIS DEEDEIEGAF KLPSGRKRRL KKMKERVWFN EKLPDPQEQF CKGLCFTNVY  300
VFRDALRDFH IRTLRNFQYQ RNAPDRIIVW CSERAHGCDF YICASKIARE QTFCIKKCDM  360
LHTCGACAEN TKVTTKWLSK SVQPALRDDI RAPVDALIKK TKTKFSVDVS RSVAYRARRK  420
AVDVVQGDHK QQYLRLRDYL QAFLDTNPGS RCIVTTFVDP ENPAPTPRFK YMFYCLAASK  480
EGFLNGCRPF IAFGVVDKED GESWTWFLTQ LRCCIGSGNK FGTYIIISDR QKTSHDGNPM  540
GHDNVVGQSS DRGAPVVVSL QLESHTLDDT GTDANVPGPT RTELGAGAVD GAVQGEEGEN  600
EAGSQPMEPY VGMSFAATSS KSPKLMMEEL RLLLSWTLFQ IQNLLTVMRR WKKEPPIFAE  660
EEAGTSKKKK KRKRETIKQT QCKAKMLVKL IDGRWEVTHF VRDHNHPLVK KPSLSKYLRS  720
HQGISPDEKE FLRILYNCNL TTDCLYCATT QCPVCKKCKV FLKRTYDAYN GRVLRSEMMV  780
PFGPKAITNL CTSFRRDDTK EGDLIETIAH FKDIQKTDPD FFYKELASSF DWVFGAFLEA  840
MDGKPLDNFI IDQDGAMRQS RQNIFPTTVH RCCRWHIMKK AQEKVGWPLC RNPGLSDDFN  900
KCVDFSFTID EFEQNWAGLM MKFFPFLQST QRSEGFNTVL KRYVNPHNSM LNFVKQYEKI  960
QNHILAKEGC NDYRTEHLGI ELWSNFPIEK QAYKTYTRDL YRKFREEFEL IGRYNAFQVG  1020
ADIFELRPNQ EFVAKYGSRN YLVQARVEEG SYLCECCKMD KDGILCCHIL KVFTHIGVDV  1080
MPESGSDPAQ AIVYKHMRAA RTEIGHLNKS KKKKKLTAAT GPSDDGNPRG PPPPPGSNQG  1140
AHHPGDVNPQ GPPPPPGCTR HPPPPPPPRA PPNGPTGSTQ GAHRPGDANP QRPPPPPGPT  1200
SSALRATPNG PTGRTQGAHH PGDRDGPTAP LEAASPAQAS DDFVPRDPPR STTKGRAKSR  1260
RYKSALELHP KKKNKCTQCQ STENIAGVCP LRLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	274	KRRLKKMKE
2	667	672	KKKKRK
3	667	673	KKKKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M8CJZ3	0.0	M8CJZ3_AEGTA; Protein FAR1-RELATED SEQUENCE 5
STRING	EMT23676	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-36	FAR1-related sequence 5