 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT23538 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 400aa MW: 45285.1 Da PI: 8.0444 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT23538 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 98.8 | 2.2e-31 | 83 | 133 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
EMT23538 83 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 133
79***********************************************95 PP
|
| 2 | K-box | 94.2 | 2.2e-31 | 240 | 336 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
s++ ++e +a+++qqe++kL+++i++Lq+++R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+e el+++n +Lr+k+ e
EMT23538 240 SNS-GtVAEVNAQYYQQESSKLRQQISSLQNSNRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKREMELHNDNIYLRSKVSE 336
333.25999**************************************************************************************975 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 33.88 | 75 | 135 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 8.8E-42 | 75 | 134 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 6.93E-30 | 76 | 155 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.02E-39 | 76 | 136 | No hit | No description |
| PRINTS | PR00404 | 4.0E-32 | 77 | 97 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 77 | 131 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.9E-26 | 84 | 131 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.0E-32 | 97 | 112 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.0E-32 | 112 | 133 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.4E-23 | 249 | 334 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 14.101 | 250 | 340 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MAEGLKLAAE HSSATILIQS DCAVALKALS DDSLERSTYG QLADLSCGAS GVTVNDHQLA 60
APAPEDSAVA GSEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI 120
VFSSRGRLYE YSNNSVCVFD EFHFMWKKNV KWPVWLEKAH WKGELLSQLD RGSPCSMESS 180
LAGETCDSTS FGPMCHNYYY GCIVIRKQSV HKCVLIRDWT VTCSVKATIE RYKKANSDTS 240
NSGTVAEVNA QYYQQESSKL RQQISSLQNS NRSLVRDSVS TMTLRDLKQL EGRLEKGIAK 300
IRARKNELMY AEVEYMQKRE MELHNDNIYL RSKVSENERG QQPMNMMASG STSSEYDHMV 360
PPFDSRNFLQ ANILQQQQQQ QHYSQQLQPT ALQLGQQYFN
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 1e-18 | 75 | 136 | 1 | 62 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT188779 | 0.0 | KT188779.1 Aegilops tauschii WAG-2g MADS box transcription factor mRNA, complete cds. |
