PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT23519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 788aa MW: 87425.4 Da PI: 4.7783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 639 | 681 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +WT+ + +l++++ +q+G++ ++ I + ++ +++ q++ ++ EMT23519 639 RAKWTKSDTDLFYQGLQQFGSD-FAMIQQLFP-DKSRDQVRQKFK 681 569*******************.*********.********9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.94E-9 | 631 | 686 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 6.0E-24 | 632 | 712 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-4 | 636 | 682 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.322 | 637 | 688 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-7 | 638 | 686 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-5 | 641 | 681 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 788 aa Download sequence Send to blast |
MIDDEANFDD IIDAPAEVEA AAKFHPNKLR GKLWKKSVPS RSVVPNRTVE TSDEKALALS 60 QDNLSQGLVT NQGIASSAVL GSETIGGAEA CGGTIYTPSD DVLAVSSVDR VSQNDDPHDD 120 PSEVATLQEN LVVSETQASS THPTSKTVDD LADFGELFDT HSEEENVAKS KLKIKVKLSK 180 AASKSRKTGQ KKAASTVDVV SQNKEDGNDD VRGCNDEQAQ APRHEEYVQT SDSQPPLGTD 240 DGTVDNFVNH IRILEEPGPE ETAAKLRPKS QRKPGRASSK AVGTSDDYAA ANLKDINASV 300 DIDSQDGLIN PHTDDTQPIF GEPSAEAAAT FLLDLGKKKG KGKSVTFILP DDYEGVAATD 360 TNHNDIGSDE NLNTLPQQAP QKHCLTEEHS DDQEYTDRES QYYEGERSDH GVEQQSKLDV 420 GKQELSMKLR SRTEIQKVGL SEHIVDDHLD EDFVEPSAAE QNNDSGDENT AGGKQKAPRK 480 SRKKDPNKEP LRGSKRTSTK STSEKSQPNQ QKNKSEVSSR GRKRALKDTM TEQPEKKLTH 540 RIRQKRAQEV QTLLQKPDHE IDRMKLSVTH LRLLQEARER IQSKTPSGPS SSNQSSSRFG 600 DTDDFDPFGD NYDNDRTENQ ALENATKLNY HSYMDKKTRA KWTKSDTDLF YQGLQQFGSD 660 FAMIQQLFPD KSRDQVRQKF KSEDKKHPMQ VHDAILHRSR DNLYLKQVMK QLNIEDSLKD 720 INITQKQEVA PTEGNTGNDV ISETNTFSVE NVSNLSDEEM GTHQSEVKEG EDVAGNADDV 780 DLDVFDWY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK371337 | 0.0 | AK371337.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131E22. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182802.1 | 0.0 | uncharacterized protein LOC109768495 isoform X1 | ||||
Refseq | XP_020182803.1 | 0.0 | uncharacterized protein LOC109768495 isoform X1 | ||||
TrEMBL | A0A3B5ZXX5 | 0.0 | A0A3B5ZXX5_WHEAT; Uncharacterized protein | ||||
TrEMBL | M8BNJ2 | 0.0 | M8BNJ2_AEGTA; Transcription factor TFIIIB component B | ||||
STRING | EMT23519 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2595 | 29 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-27 | MYB_related family protein |