PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 280aa MW: 30200.9 Da PI: 6.2705

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT23170	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.7	8.7e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G+g+W++++ g+ R+ k+c++rw +yl EMT23170 14 KGPWTPEEDIILVSYIQENGPGNWRAVPINTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.676	9	65	IPR017930	Myb domain
SMART	SM00717	4.4E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.3E-19	15	88	IPR009057	Homeodomain-like
CDD	cd00167	8.57E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-5	65	98	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ ENGPGNWRAV PINTGLMRCS KSCRLRWTNY 60 LRPGIRRGNF TTHEEGIIVH LQSLLGNSSA ETAANLPGAV HLDNHHHRYH HDAIAASSST 120 VDHGCYAACS NPEVTQQTTI TMRRSPFADV AADCSSSSYA SSMDNISRLL DGFMKSSPPT 180 ATDVKPNIAV VSDPFMSFDR MSGTGAGLAF ISGVPQQQQQ QPALMGGMSY DDEATGQQQQ 240 LHHQLPLCSI AKWLLDEAAG QGGDPMDLSD GGCSSLPLLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-14	14	98	27	110	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357478	0.0	AK357478.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054F12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172742.1	1e-177	myb-related protein 306-like
Swissprot	B3VTV7	1e-69	MYB60_VITVI; Transcription factor MYB60
TrEMBL	M8BE30	0.0	M8BE30_AEGTA; Myb-related protein 306
STRING	EMT23170	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	3e-60	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]