PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT23005 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 26934.4 Da PI: 10.4709 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 88.6 | 4.9e-28 | 36 | 127 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k ltpsdv+k++rlv+pk++ae++ +++ e++ l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++g +v F++++ EMT23005 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGHIVHFERVR 127 99****************************87445557778999*********************************************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.6E-37 | 30 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-27 | 33 | 128 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.45E-27 | 34 | 128 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 36 | 143 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-20 | 36 | 134 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-25 | 36 | 127 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGHI 120 VHFERVRGLG TGDRLSVAQA TGSSSAAGVV ARARRHHLRV AERGGRQEQH GIGAAVETSP 180 AVRRQPRLRS GARGRGNNAN VRLHPPEPLR CSGHGAKLLG QFIKMMRSEA ILEDPDNQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-46 | 31 | 128 | 3 | 98 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-46 | 31 | 128 | 3 | 98 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185469.1 | 1e-96 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 5e-67 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | M8BDK1 | 1e-176 | M8BDK1_AEGTA; B3 domain-containing protein | ||||
STRING | EMT23005 | 1e-177 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 2e-48 | B3 family protein |
Publications ? help Back to Top | |||
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