PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 862aa MW: 93745.7 Da PI: 6.586 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 37 | 94 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+++Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ EMT22839 37 YVRYTPEQVDALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 94 6789****************************************************97 PP | |||||||
2 | START | 173.8 | 1e-54 | 185 | 392 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +++l+ i +g g+++l++++++a EMT22839 185 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDVLQIIPTGngGTIELIYMQTYA 284 68999*****************************************************.8888888888******************************** PP XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197 +++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ +++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s + ++k++ EMT22839 285 PTTLAApRDFWILRYTSGLEDGSLVICERSLTQATGGPSgpnAPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKMTI 385 ****999*****************************9999999********************************************************** PP HHTXXXX CS START 198 atlqrqc 204 a+l++ + EMT22839 386 AALRHIR 392 **99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.321 | 31 | 95 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-15 | 33 | 99 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 35 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.22E-16 | 36 | 96 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 37 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 38 | 94 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.43E-6 | 88 | 127 | No hit | No description |
PROSITE profile | PS50848 | 27.176 | 175 | 375 | IPR002913 | START domain |
CDD | cd08875 | 2.02E-68 | 179 | 395 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.5E-23 | 183 | 375 | IPR023393 | START-like domain |
SMART | SM00234 | 3.5E-48 | 184 | 394 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.73E-39 | 185 | 395 | No hit | No description |
Pfam | PF01852 | 1.6E-52 | 185 | 392 | IPR002913 | START domain |
Pfam | PF08670 | 2.4E-51 | 719 | 861 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 862 aa Download sequence Send to blast |
MAGAMVVHGH GGGGRDRDRD RSSPGGSGAP QVDTGKYVRY TPEQVDALER VYSECPKPSS 60 LRRQQLIREC PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQTVNRKLSA MNKLLMEEND 120 RLQKQVSRLV YENGYMRTHL NNPSVATTDT SCESVVTSGQ HQQQQNAVVP RPQRDANNPA 180 GLLAIAEETL AEFLSKATGT AVDWVQMVGM KPGPDSIGII AVSHNCSGVA ARACGLVSLE 240 PTKVAEILKD RPSWYRDCRC VDVLQIIPTG NGGTIELIYM QTYAPTTLAA PRDFWILRYT 300 SGLEDGSLVI CERSLTQATG GPSGPNAPNF VRAEVLPSGY LIRPCEGGGS MIHIVDHVDL 360 DAWSVPEVLR PLYESPKILA QKMTIAALRH IRQIAHESSG EMPYGGGRQP AVLRTFSQRL 420 SRGFNDAVNG FLDDGWSLMS SDRAEDVTIA INSSPNKLAG SHVNPSQMFT AIGGGVLCAK 480 ASMLLQNVPP ALLVRFLREH RSEWADPGVD AYSAAALRAS PYAVPGLRAS GFMGSQVILP 540 LAHTLEHEEF LEVIRLEGHS LCHDEVVLSR DMYLLQLCSG VDENAAGACA QLVFAPIDES 600 FADDAPLLPS GFRVIPLDAK TDAPSATRTL DLASTLEVGP GGTRAPSDAS STSNTRSVLT 660 IAFQFSYENH LRESVAAMAR QYVRTVVASV QRVAMAIAPS RPGGQLEMKN PPGSPEAHTL 720 ARWIGRSYRF HTGAELLCTE SQSADASLKA LWQHSDSIMC CSLKAAPVFT FANQAGLDML 780 ETTLIALQDI SLEKILDDDG RKALCSEFPK IMQQGFAYLP GGVCVSSMGR PVSYEQAVAW 840 KVLGDDDAPH CLAFMFVNWS FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364215 | 0.0 | AK364215.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022L20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192001.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A453LR02 | 0.0 | A0A453LR02_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BLM3 | 0.0 | M8BLM3_AEGTA; Homeobox-leucine zipper protein HOX32 | ||||
STRING | EMT22839 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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