PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT22640

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 400aa MW: 44627.8 Da PI: 7.0252

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT22640	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.3	1.4e-14	177	267	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk GF v +++++k k+++e + +++C k ++++ k er++ +t+C + k++ + ++w+vt+ eHnH+l EMT22640 177 EFYQTYAKFHGFAVNTEYNTKIKKTNEYSRGEMRCHKARRNKKGKGVapVIPERKRGIILKTECPVQCKLNVD-GAQWVVTEYFDEHNHKLI 267 6***********************************9999987767778999999****99999999.99************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	177	267	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MASSVQGANT DKCTGSQLQL ANVVNQGYCG GATSANVSWQ ASQIADIACQ FGVTDHTRWA 60 HAAQQGPSTT INSGAGTSTA GSSERTEDAF HQPANNHAAN NAESESEMAI IPAMPTSTPL 120 NTSTGNTQLD ESATDTEVND ETDDEAQGDE DGGQSEIMVP QPPYVGQRFE SFAEAKEFYQ 180 TYAKFHGFAV NTEYNTKIKK TNEYSRGEMR CHKARRNKKG KGVAPVIPER KRGIILKTEC 240 PVQCKLNVDG AQWVVTEYFD EHNHKLIKKF DLVKFLTSHR GFTPLEKKFI KLLHDCNVGP 300 SRMVQILSLI HNKKGTLSSM PYIPADVTNL KAKYRRESKL ADIEATMAYF DEKAKEDPAF 360 FYRIRLDDED RVRNMYWVDG AARRAYKHSE IAFHRRDISH

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MASSVQGANT DKCTGSQLQL ANVVNQGYCG GATSANVSWQ ASQIADIACQ FGVTDHTRWA  60
HAAQQGPSTT INSGAGTSTA GSSERTEDAF HQPANNHAAN NAESESEMAI IPAMPTSTPL  120
NTSTGNTQLD ESATDTEVND ETDDEAQGDE DGGQSEIMVP QPPYVGQRFE SFAEAKEFYQ  180
TYAKFHGFAV NTEYNTKIKK TNEYSRGEMR CHKARRNKKG KGVAPVIPER KRGIILKTEC  240
PVQCKLNVDG AQWVVTEYFD EHNHKLIKKF DLVKFLTSHR GFTPLEKKFI KLLHDCNVGP  300
SRMVQILSLI HNKKGTLSSM PYIPADVTNL KAKYRRESKL ADIEATMAYF DEKAKEDPAF  360
FYRIRLDDED RVRNMYWVDG AARRAYKHSE IAFHRRDISH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175678.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M8BCM3	0.0	M8BCM3_AEGTA; Uncharacterized protein
STRING	EMT22640	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7287	5	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-19	FAR1-related sequence 5