PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 345aa MW: 36813.7 Da PI: 4.347

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT22284	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.8e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed +l+ +++++G +W++ +r g+ R++k+c++rw +yl EMT22284 16 RGSWTPQEDMRLIAYIQKHGHANWRALPRQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	51.4	2.4e-16	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ ++++++lG++ W++Ia++++ gRt++++k+ w+++l EMT22284 69 RGNFTAEEEATVIKLHALLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-22	7	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.211	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	2.7E-29	13	110	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-12	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-15	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.21E-10	18	63	No hit	No description
PROSITE profile	PS51294	24.393	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-25	67	117	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-14	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-15	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	4.21E-11	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI 60 NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRASE 120 QKPGVGESKG EAADGDPDTP VPSLSSASSS MTSSEGSNGG AGGQGSNGGA GEQCGTSNDP 180 ETMDVPSPLE LELEPVMDIL DMLADAPTEA LATAAPMPTS SCSSPSLTTG AGGGGGVEEL 240 LELPDIDMDA DIWSIIDDDI ARLQQGDATV PCTTKASQEE EGNEWWLQDL EKELGLWGPT 300 EESQPQAGPH DQIGYPGQLS ETEGDMVMVS SHPQSRSDHE ASNSE

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGRGRAPCCA KVGLNRGSWT PQEDMRLIAY IQKHGHANWR ALPRQAGLLR CGKSCRLRWI  60
NYLRPDLRRG NFTAEEEATV IKLHALLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRASE  120
QKPGVGESKG EAADGDPDTP VPSLSSASSS MTSSEGSNGG AGGQGSNGGA GEQCGTSNDP  180
ETMDVPSPLE LELEPVMDIL DMLADAPTEA LATAAPMPTS SCSSPSLTTG AGGGGGVEEL  240
LELPDIDMDA DIWSIIDDDI ARLQQGDATV PCTTKASQEE EGNEWWLQDL EKELGLWGPT  300
EESQPQAGPH DQIGYPGQLS ETEGDMVMVS SHPQSRSDHE ASNSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	5e-25	14	117	2	104	C-Myb DNA-Binding Domain
1msf_C	5e-25	14	117	2	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248649	1e-126	AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBank	AK369689	1e-126	AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020189024.1	0.0	myb-related protein Zm1-like
Swissprot	P20024	1e-112	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	M8BK07	0.0	M8BK07_AEGTA; Myb-related protein Zm1
STRING	EMT22284	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	9e-67	myb domain protein 63

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]