PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22079 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 24320.9 Da PI: 10.3086 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 5 | 34 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +++WT+eE+ l+ ++ ++G g W+tI + EMT22079 5 KQKWTAEEEAALKAGIGKHGAGKWRTILKD 34 79*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.102 | 1 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.64E-10 | 2 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 4 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-5 | 5 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.27E-13 | 6 | 86 | No hit | No description |
PROSITE profile | PS51504 | 17.92 | 153 | 219 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.44E-11 | 154 | 215 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 4.2E-5 | 154 | 219 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 5.3E-12 | 158 | 215 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.1E-7 | 161 | 216 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGI GKHGAGKWRT ILKDPEFSNI LRCRSNVDLK VRSCVRFLGC 60 QTMRASTRLE TLMTVERLQD KWRNMNVTVN ASGTRDKVRT TTTTTPTAKK PRSAPKQESH 120 STAITTITSD GDDDVIDVKP IIKPIVTFTT GSGNKSLSRL ENIILEAVKT LNEPTGSYKT 180 AVANYIEEQY WPPADFDHVL SAKLNELTSS GKLMKIIKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00607 | ChIP-seq | Transfer from AT1G49950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249564 | 1e-166 | AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence. | |||
GenBank | AK376302 | 1e-166 | AK376302.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3120E05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159514.1 | 1e-123 | single myb histone 5-like | ||||
Swissprot | C0HIA3 | 7e-74 | SMH6_MAIZE; Single myb histone 6 | ||||
TrEMBL | A0A453JMP5 | 1e-160 | A0A453JMP5_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BJD7 | 1e-161 | M8BJD7_AEGTA; Uncharacterized protein | ||||
STRING | EMT22079 | 1e-161 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1324 | 38 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 5e-45 | telomere repeat binding factor 1 |
Publications ? help Back to Top | |||
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