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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21706 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | NAC | ||||||||
Protein Properties | Length: 1032aa MW: 113809 Da PI: 4.8518 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.9 | 4e-53 | 22 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+ykvePwdLp+ ++++++++wyfFs+ d+k+a+ r+nrat+ gyWk+tgkd+ev + + ++ EMT21706 22 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKVEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAGGYWKTTGKDREVRH-GARV 120 579***************************.99***************4357888999**************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvf+ grapkge+t+Wvmheyrle EMT21706 121 VGMKKTLVFHAGRAPKGERTNWVMHEYRLE 150 ****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 19 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.279 | 22 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-28 | 24 | 149 | IPR003441 | NAC domain |
Pfam | PF13966 | 5.3E-16 | 733 | 832 | IPR026960 | Reverse transcriptase zinc-binding domain |
Pfam | PF13456 | 8.1E-17 | 930 | 1031 | No hit | No description |
CDD | cd06222 | 5.22E-14 | 933 | 1031 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1032 aa Download sequence Send to blast |
MTHPSSSSSS APAAAPDDPT SLAPGFRFHP TDEELVSYYL KRKVLGRPLK VDAIAEVDLY 60 KVEPWDLPAR SRLRSRDSQW YFFSRLDRKH ANRARTNRAT AGGYWKTTGK DREVRHGARV 120 VGMKKTLVFH AGRAPKGERT NWVMHEYRLE GDGAAGIPQD SFVVCRIFQK AGPGPQNGAQ 180 YGAPFVEEEW EADEDDDFGP MPVQRDVFGE HEAPGAMEKG YLQMNDLIQD LAGQNENGSV 240 VLPVSDTSNT SSHSEDVEGN SGDILNDPSL GSNFLQYIHP GEQNSPMLNE NMLSNANVGD 300 FLNSSSPNDE FLELKDLELP LGNDSTIWPS DGWAWKTAFP LDAVNGANNE VPLITGDQPF 360 QPDELAQLLQ TLQDDSSQLG STMTDLPHSS ITNSVKPEDD SLMYFDAPFD NSMFSDGFRQ 420 TNGFLGSPAT ILSGIETLDD GIPYYDAMDD NLFNDMMCSV QQSAGSSSHV FNGPVLTQEV 480 NNPNYTYSPT QKVVEPNFVA GAPSSARLSE AGGQLNCVVL PDSQAKNGSM GKRFVKMLDS 540 ISAPPAFAAE FPGKSLSGVH PNTISVSTEV ISIGSLTVAS RQGKWSFQKD EDMELLFSTG 600 FQPDNRIHCG GCNTVTAVLR GGFCLFFLSA IMLLFIAKVD RVGRSNLSDE LMLFGASLAA 660 FSRMLSVARA IIASSQYFSV SLLDLMDPIT ETWDVELVKE LFCEEDAKEM PAIAVDSGMD 720 DLVAWHFDTK GLFSVKSAYH LGTRLRDASK DTDASSSTVV PQASQRWKRF WSLSLPPNIR 780 MFLWRLSHKS LLLRMNIKRK HVDLDTRCPM CLRLDEDGGH LFLKCKLVKQ VWRELQLEDV 840 RLVLLECVNP DAIFDHSGSL KPEKRDLMLV FLWEWWKVRN KANQGEKIKP AAGVAYYVRK 900 LLTDFYVEEG SIQAHTLPAI VQVCRKPKGS QEGRGAWGCV VGLGQGEFIA ACAGKLDYLV 960 SSLQAEATSC NKAIEAAGEM GLHQVIFESD SLQLVNAINS GDYNLSSIGV LSREARSLDA 1020 FEFNFCKRSC NC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-47 | 21 | 170 | 14 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM027574 | 0.0 | HM027574.2 Triticum aestivum NAC transcription factor NTL5 (NTL5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181541.1 | 0.0 | NAC domain-containing protein 78-like | ||||
TrEMBL | M8CEW0 | 0.0 | M8CEW0_AEGTA; NAC domain-containing protein 78 | ||||
STRING | EMT21706 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7107 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 7e-74 | NAC domain containing protein 53 |