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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21703 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | FAR1 | ||||||||
Protein Properties | Length: 739aa MW: 81840 Da PI: 5.7548 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.1 | 6.7e-14 | 194 | 272 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r ks+++++ g +++ +C + gk++ k+ r++C+a +++ +++d+ w+vt+ ++ HnH+++ EMT21703 194 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHAFS 272 6*********************8777.66789**********98877..........9*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-9 | 194 | 272 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MEFSVEEEPR SGAPLALGLG EDAMEAVRRA FPGQDFAIDV VNRAFGWRNP EERSQQDSSA 60 CGISGACTSE KPVDLEQVEN AGKSCAQQDP SASEMQLRSQ EAEQAGQRCD APPAPADVGA 120 EAGGPPAPAD VGAEAGGGWN RRVRRGRIPD EREPDAQRVS ALEKALTGFA ERQTDVVVNP 180 TVGTCFDSIT EAYDFYNLYS WEMGFGIRYG KSRRNTKGGK CMQEITCVNA GKPNMGGKSR 240 RCECTALIRL LRTDDNGWYV TQHRKVHNHA FSTTYGNKVH WPSHKHLDKY TRDLVRQLRH 300 NNVNLGVYDT IASFFGRMEN VPFNKRSIRT LCGEVIREQA DDDARKTMET AAASGERPEN 360 HTGEETTFNC MGLASTTVGS PNMPVDPLRY PEQDDTHSNA EAGRLADLLL AFGDCHLVLK 420 SCTYDDLINS NGTMSGLEEA VKAVTPHLQQ GIFGDLWSRA HNSGGVVSAQ VLTIKDLFRF 480 TRWLTTTTGQ HNLRCVQQRA KLVNSGKAVL EPEQIALLHL YQAENDEYSV KMNKLQGERD 540 AKIAHYMAKI DEARKSFEVS IQAAKQHYPV SASYVALDSN ELRGQCWTMY LAQCRKEAKD 600 LNAKASNIVE KYGPEVIQRH LFEFCSQETN RQALLKYAQT KVNKLKEAGD AREDTLHDYM 660 TLLDIEKAYA LLAAEEQIAN GPDTCGGNED ADHGNRNNTI ARCEAAEGAR GDGQDGGEGA 720 SEGPPRQKRQ RNDQDYVWW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358874 | 0.0 | AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188421.1 | 0.0 | uncharacterized protein LOC109774115 | ||||
TrEMBL | A0A453KBI3 | 0.0 | A0A453KBI3_AEGTS; Uncharacterized protein | ||||
TrEMBL | M8BIY3 | 0.0 | M8BIY3_AEGTA; Uncharacterized protein | ||||
STRING | EMT21703 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06250.1 | 3e-10 | FAR1-related sequence 7 |