PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT21703

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 739aa MW: 81840 Da PI: 5.7548

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT21703	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.1	6.7e-14	194	272	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r ks+++++ g +++ +C + gk++ k+ r++C+a +++ +++d+ w+vt+ ++ HnH+++ EMT21703 194 DFYNLYSWEMGFGIRYGKSRRNTKGG-KCMQEITCVNAGKPNMGGKS----------RRCECTALIRLLRTDDNGWYVTQHRKVHNHAFS 272 6*******************8777.66789******98877..........9***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-9	194	272	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence Send to blast
MEFSVEEEPR SGAPLALGLG EDAMEAVRRA FPGQDFAIDV VNRAFGWRNP EERSQQDSSA 60 CGISGACTSE KPVDLEQVEN AGKSCAQQDP SASEMQLRSQ EAEQAGQRCD APPAPADVGA 120 EAGGPPAPAD VGAEAGGGWN RRVRRGRIPD EREPDAQRVS ALEKALTGFA ERQTDVVVNP 180 TVGTCFDSIT EAYDFYNLYS WEMGFGIRYG KSRRNTKGGK CMQEITCVNA GKPNMGGKSR 240 RCECTALIRL LRTDDNGWYV TQHRKVHNHA FSTTYGNKVH WPSHKHLDKY TRDLVRQLRH 300 NNVNLGVYDT IASFFGRMEN VPFNKRSIRT LCGEVIREQA DDDARKTMET AAASGERPEN 360 HTGEETTFNC MGLASTTVGS PNMPVDPLRY PEQDDTHSNA EAGRLADLLL AFGDCHLVLK 420 SCTYDDLINS NGTMSGLEEA VKAVTPHLQQ GIFGDLWSRA HNSGGVVSAQ VLTIKDLFRF 480 TRWLTTTTGQ HNLRCVQQRA KLVNSGKAVL EPEQIALLHL YQAENDEYSV KMNKLQGERD 540 AKIAHYMAKI DEARKSFEVS IQAAKQHYPV SASYVALDSN ELRGQCWTMY LAQCRKEAKD 600 LNAKASNIVE KYGPEVIQRH LFEFCSQETN RQALLKYAQT KVNKLKEAGD AREDTLHDYM 660 TLLDIEKAYA LLAAEEQIAN GPDTCGGNED ADHGNRNNTI ARCEAAEGAR GDGQDGGEGA 720 SEGPPRQKRQ RNDQDYVWW

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence Send to blast

MEFSVEEEPR SGAPLALGLG EDAMEAVRRA FPGQDFAIDV VNRAFGWRNP EERSQQDSSA  60
CGISGACTSE KPVDLEQVEN AGKSCAQQDP SASEMQLRSQ EAEQAGQRCD APPAPADVGA  120
EAGGPPAPAD VGAEAGGGWN RRVRRGRIPD EREPDAQRVS ALEKALTGFA ERQTDVVVNP  180
TVGTCFDSIT EAYDFYNLYS WEMGFGIRYG KSRRNTKGGK CMQEITCVNA GKPNMGGKSR  240
RCECTALIRL LRTDDNGWYV TQHRKVHNHA FSTTYGNKVH WPSHKHLDKY TRDLVRQLRH  300
NNVNLGVYDT IASFFGRMEN VPFNKRSIRT LCGEVIREQA DDDARKTMET AAASGERPEN  360
HTGEETTFNC MGLASTTVGS PNMPVDPLRY PEQDDTHSNA EAGRLADLLL AFGDCHLVLK  420
SCTYDDLINS NGTMSGLEEA VKAVTPHLQQ GIFGDLWSRA HNSGGVVSAQ VLTIKDLFRF  480
TRWLTTTTGQ HNLRCVQQRA KLVNSGKAVL EPEQIALLHL YQAENDEYSV KMNKLQGERD  540
AKIAHYMAKI DEARKSFEVS IQAAKQHYPV SASYVALDSN ELRGQCWTMY LAQCRKEAKD  600
LNAKASNIVE KYGPEVIQRH LFEFCSQETN RQALLKYAQT KVNKLKEAGD AREDTLHDYM  660
TLLDIEKAYA LLAAEEQIAN GPDTCGGNED ADHGNRNNTI ARCEAAEGAR GDGQDGGEGA  720
SEGPPRQKRQ RNDQDYVWW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358874	0.0	AK358874.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1084N18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188421.1	0.0	uncharacterized protein LOC109774115
TrEMBL	A0A453KBI3	0.0	A0A453KBI3_AEGTS; Uncharacterized protein
TrEMBL	M8BIY3	0.0	M8BIY3_AEGTA; Uncharacterized protein
STRING	EMT21703	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-10	FAR1-related sequence 7