PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21364
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 221aa    MW: 23752.7 Da    PI: 9.2457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21364genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13151196655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  EMT21364 151 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 196
               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16148204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-13149200No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15150210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MLRQGMGVGF RNGAANAAAA AVDSSGGGGG RLKGQLSFSS RQGSLMSQIS EMGSEDLGGS  60
SPEGAGGSRG YIPGYPMSSG WEESSLMSEN MSGMKRPRDS SEPAAQNGLA HQFSLPKTSS  120
EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE LVPNMDKQTN  180
TADMLDLAVD YIKELQEQVK VINESRANCT CSASKHQQYS G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174831.11e-161transcription factor bHLH130-like
SwissprotQ66GR32e-58BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A453RJJ11e-161A0A453RJJ1_AEGTS; Uncharacterized protein
TrEMBLM8BHD61e-162M8BHD6_AEGTA; Transcription factor bHLH130
STRINGEMT213641e-162(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]