PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT21149

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

FAR1

Protein Properties

Length: 771aa MW: 87874.1 Da PI: 9.0247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT21149	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.7	2.5e-15	199	278	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF vr +ks+ + + + +++ vC + gk+ +e+++ +tr+gC+a++++ +++d+ w++++ + +HnH l+ EMT21149 199 EFYNLYSWECGFGVRLAKSRLNVER-KRCMQEIVCACAGKPLRENSR---------STRCGCNAMIRLLRSNDKGWYIAEHKDDHNHLLS 278 6***************9999554.578899****9987655.........9****************************885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-12	199	277	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.594	522	558	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0013	533	560	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:4.10.60.10	5.9E-4	712	759	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MEENSSTREH VLRLSGYYNC LNQVGVNLSD KKTTSFKRKS KGKKGNFKKN GKQVAAQVKK 60 HKSGPKLETK YFYCKRTGHI GVKRMKKLHA DGILESLDCE SLDASEPCPM CKMTKTPFSG 120 TMERATDLLE IIHTDVYGPM NIEARGGVRV GKAPEEREMN LNRISALELS VRAYAEKRDG 180 IVVYPTIATS FDSLDEAYEF YNLYSWECGF GVRLAKSRLN VERKRCMQEI VCACAGKPLR 240 ENSRSTRCGC NAMIRLLRSN DKGWYIAEHK DDHNHLLSLT CGQKMHWKSH KHIDRYTKDL 300 VKQLRDNNVG LGKVFSIVGS FFGTVDKVSF TKRSLKTLCR KLNREQSDMD AVKTMAILAE 360 MKANDLDFNY TVQVDGENRL AIEAELPNTV HRWCKWHVLK KAKESMGVLW SKNSDFKMEF 420 HKLVHHMITE EEFEAGWQQM LERFCQLLIC GVFVLQSGVS LRNNLPLERH ASKVYTRAMF 480 EKFGEELYKC GAHVLDEIVP RKVYRSTHVD AAAREKWSKV EFTIEVDDEE SFFSCECGMF 540 EHAGLVCCHA LQVMVHFRLS KIPEKHIMKR WTRDANDVLP AHLVRYQKDR GPPSSDTFRH 600 HTMYTKALEC VLLGDSNVKC YDVFMTMMKE VQATLLPLSA EKDGMGLAER EQQNQVLVQE 660 HPGALQVEGG STRPACDGET SCSGIIGQQN KRPRGRPTTS RDKAPYEQHL KRSWFCTICT 720 GQGHKCTACP ERGDVPKMPR KLPKCTNCGV LGHRRNACGT KKSGPFEPNF L

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MEENSSTREH VLRLSGYYNC LNQVGVNLSD KKTTSFKRKS KGKKGNFKKN GKQVAAQVKK  60
HKSGPKLETK YFYCKRTGHI GVKRMKKLHA DGILESLDCE SLDASEPCPM CKMTKTPFSG  120
TMERATDLLE IIHTDVYGPM NIEARGGVRV GKAPEEREMN LNRISALELS VRAYAEKRDG  180
IVVYPTIATS FDSLDEAYEF YNLYSWECGF GVRLAKSRLN VERKRCMQEI VCACAGKPLR  240
ENSRSTRCGC NAMIRLLRSN DKGWYIAEHK DDHNHLLSLT CGQKMHWKSH KHIDRYTKDL  300
VKQLRDNNVG LGKVFSIVGS FFGTVDKVSF TKRSLKTLCR KLNREQSDMD AVKTMAILAE  360
MKANDLDFNY TVQVDGENRL AIEAELPNTV HRWCKWHVLK KAKESMGVLW SKNSDFKMEF  420
HKLVHHMITE EEFEAGWQQM LERFCQLLIC GVFVLQSGVS LRNNLPLERH ASKVYTRAMF  480
EKFGEELYKC GAHVLDEIVP RKVYRSTHVD AAAREKWSKV EFTIEVDDEE SFFSCECGMF  540
EHAGLVCCHA LQVMVHFRLS KIPEKHIMKR WTRDANDVLP AHLVRYQKDR GPPSSDTFRH  600
HTMYTKALEC VLLGDSNVKC YDVFMTMMKE VQATLLPLSA EKDGMGLAER EQQNQVLVQE  660
HPGALQVEGG STRPACDGET SCSGIIGQQN KRPRGRPTTS RDKAPYEQHL KRSWFCTICT  720
GQGHKCTACP ERGDVPKMPR KLPKCTNCGV LGHRRNACGT KKSGPFEPNF L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	5e-81	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020168947.1	1e-161	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M8BGQ5	0.0	M8BGQ5_AEGTA; Protein FAR1-RELATED SEQUENCE 3
STRING	EMT21149	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-14	FAR1 family protein