PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21093
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family FAR1
Protein Properties Length: 657aa    MW: 76880.9 Da    PI: 6.7537
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21093genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.35.8e-0932110275
      FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgk 75 
               fYn+YA ++GF + +++sk+++++g    +kr f+C   gk+e+++++   +e  + ++ +   +   ++ v+++++++
  EMT21093  32 FYNDYAFKMGFGIHTTASKNNQKKGpvVLIKRVFRCVHAGKPENKTDTssaSEAISMEQHSPSKESWFEMDVTNKRQKN 110
               9*************99999997776225689************999885552222333444444444455555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-63288IPR004330FAR1 DNA binding domain
PfamPF105511.8E-29234327IPR018289MULE transposase domain
PROSITE profilePS5096611.165517553IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-6522553IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-4528555IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MSDDEEYDEI SSQPLAPYVG MEFDYVDDAK LFYNDYAFKM GFGIHTTASK NNQKKGPVVL  60
IKRVFRCVHA GKPENKTDTS SASEAISMEQ HSPSKESWFE MDVTNKRQKN RLPERVRFYH  120
SHRNISQEDL DLILTMHDVN FSTSSCMGML GRVRGGDRRI LPYVKRDVTN FRSKLRQTIN  180
LRDMDMTVAY FERRQDENPE FYYAKTVDEE TNSVTGLFWV DGRTRALYRK YRDCVFFDTT  240
FCTNRYNMPF APIVGVNNHL QTILLGCALL PNEQIETFKW VFQNFLIAMN NVHPLNIMTD  300
QDKAMDTTIS EALPNIVHRC CKWHAQRKAR EKLGRILSRD EVFEQAFYTC INDPETVDEF  360
EENWHHMIHC FELEDNRHLC NMWRTRHTWA PAYFRKCFFP FTSTTGRSEG LNSYFKTFIN  420
PQASVWKFVQ QYEVLQETML DREDNQAFIG EATTTPLYSR YNIERQAVNF YTRAVFGKFQ  480
SEVIASTGYV INQVPALHNG SINFGLFSNY YEDPKIFKVN VEMPDEKFEC SCSYFEMNGI  540
ICAHIIRVMT HLNVQTIPQC YFLQRWSEKA TTPTGSQLLD FGLPSNNTLK YNSLYRKLIW  600
LASQACGNDF AYNLLNDAAN QLELVIVAAR RRELPEQREV HQQQMPQQQA ETHRVPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194799.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLM8BH660.0M8BH66_AEGTA; Protein FAR1-RELATED SEQUENCE 5
STRINGEMT210930.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-94FAR1-related sequence 5