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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT21044 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 421aa MW: 46931.5 Da PI: 9.0036 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 334 | 416 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +l k++ + h gkk + + l+l+ ++r+W+ +l +++ +r+ + kGW +F++ n+L+egD ++Fkl+++ + +++v ++r+ EMT21044 334 RYLNKNYGAGHHGKK-NMISLVLQReGKSRTWNTEL--QRRVDRTSILKGWASFARGNRLREGDLCLFKLMESvEPLKMMVYIIRR 416 455566655554444.4466777774556*******..88888888999**********************999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-10 | 106 | 209 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-9 | 107 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.80E-9 | 111 | 210 | No hit | No description |
PROSITE profile | PS50863 | 7.683 | 112 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0038 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-14 | 299 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-14 | 300 | 419 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.14E-13 | 305 | 415 | No hit | No description |
SMART | SM01019 | 1.6E-5 | 321 | 417 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-12 | 335 | 416 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.815 | 353 | 417 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MSNHCECCER MIRFIRETCC AGTKAASDVT KPSSRYVDNS SSSHNGTTQS SAGEGSDSDG 60 SQKESSYSHQ KSAKKAAISD SSEELSGWCY LTEAQKVKIH ALVEKIRPEI PVLVVQMKKT 120 SANIGNLVIR KDYALKYFPC EATDIILQLP GKNKEWRCKL QIRPSGMVGA GRRNLYLGSF 180 VHDNCVQEGD ICLFQPLAKV KEEKFTVIVH LLHKEGIRRS SGGRADMAHT AAERRICAKT 240 ALTASVKEEP ATDGEDTLSL GSEEDGGNSE GASETPFILP DRPFVTPAQE QKVREKVEAI 300 DSTVPVYVAI LNRSNVRYDN FTTFLTFGAK YASRYLNKNY GAGHHGKKNM ISLVLQREGK 360 SRTWNTELQR RVDRTSILKG WASFARGNRL REGDLCLFKL MESVEPLKMM VYIIRREKCL 420 A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155765.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | M8BGD9 | 0.0 | M8BGD9_AEGTA; B3 domain-containing protein | ||||
STRING | EMT21044 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |