PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21031
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 500aa    MW: 55786.4 Da    PI: 7.4134
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21031genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-07109128626
               -SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
               C  f+++G C+yG+rC++ H+
  EMT21031 109 CT-FYQNGVCSYGSRCRYEHV 128
               66.6666***********997 PP
2zf-CCCH23.31.1e-07213234426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               ++C+ fa+ GtC+yG  C+ +Hg
  EMT21031 213 PICS-FAAAGTCPYGKECPQMHG 234
               5788.*****************9 PP
3zf-CCCH23.31.1e-07315336426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               ++C+ fa+ GtC+yG  C+ +Hg
  EMT21031 315 PICS-FAAAGTCPYGKECPQMHG 336
               5788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.798103130IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-5103129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.95E-5106127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4107127IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4109128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136209236IPR000571Zinc finger, CCCH-type
SMARTSM003560.017210235IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5214234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136311338IPR000571Zinc finger, CCCH-type
SMARTSM003560.017312337IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-5316336IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.08E-13364444No hitNo description
Gene3DG3DSA:3.30.40.104.8E-11373439IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.11E-4379440No hitNo description
SMARTSM001841.1E-6380437IPR001841Zinc finger, RING-type
PfamPF000972.7E-7380437IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.371380438IPR001841Zinc finger, RING-type
PROSITE patternPS005180404413IPR017907Zinc finger, RING-type, conserved site
SMARTSM0035614467495IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.671467496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSNRYRVFSA PLARSGASRP MIRAGLGGFV ELEESVPMKS VAILVIELAL AWQSMQFQIP  60
VLVQMQWYRA YNLTPGCNLV GENEGDGDFC RNRTGGHDFF VAFYVHQVCT FYQNGVCSYG  120
SRCRYEHVEV SSEYTPPSTT AALAPSNSYL SWCPLCEGEI DVSNQTHKSL SVCSVHQSTW  180
RFDDEDCIPE DGNSLSSALT AQNQALHPLA HLPICSFAAA GTCPYGKECP QMHGDPCTSC  240
GKQCLHPYRP SEGGAHIKLC KRNNKRLETL KKSEEMECSS TWRFDDEDCI PEDGNSLSSA  300
LTAQNQALHP LAHLPICSFA AAGTCPYGKE CPQMHGDPCT SCGKQCLHPY RPSEGGAHIK  360
LCKRNNKRLE TLKKSEEMEC SVCLDRVLSK PTAAEKRFGL LPECDHAFCI TCIRKWRSSS  420
LTSSMDIDST VKACPICRKV SYYVIPSATW YSSKEEKQDI IDGYKAKLKS IDCRYFDFGR  480
DTCPFGGRCF YKQQFRMKPN
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3631870.0AK363187.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2013F15.
GenBankAK3720370.0AK372037.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2145F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192975.11e-155E3 ubiquitin-protein ligase makorin-like isoform X4
RefseqXP_020192977.11e-155E3 ubiquitin-protein ligase makorin-like isoform X4
SwissprotQ5ZA071e-102C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLM8CD130.0M8CD13_AEGTA; E3 ubiquitin-protein ligase makorin
STRINGEMT210310.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.28e-80C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]