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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
EMT20928 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 234aa MW: 25695.8 Da PI: 6.571 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT20928 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.4 | 2.2e-17 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFq rRa++k
EMT20928 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQTRRARYK 115
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 108.1 | 6.3e-35 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFq rRAR+k+k +E+++++L++a+da++ +n+rLe+e +L+e+l+e
EMT20928 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQTRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKERLAE 153
9**************************************************************************************99975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MSPEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA AGEGAGGDDA 60
AKKRRLSDEQ AQFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQTR RARYKSKLIE 120
EEFSKLRAAH DAVVVHNCRL EAELLRLKER LAETEEEKNK AMAAAAATAG GGGGSSPSSS 180
SFSTVTAMVG GQQFGMEEVE TDLTYMSEYA YTNYMMDLAA GGYLGVGGVY DQFS
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 42 | 64 | RRRARQAAAGEGAGGDDAAKKRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK365295 | 0.0 | AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08. |
| GenBank | AK370253 | 0.0 | AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Gao S,Fang J,Xu F,Wang W,Chu C
Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
Plant Cell, 2016. 28(3): p. 680-95
[PMID:26977084]
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