PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20593
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 365aa    MW: 40553.1 Da    PI: 6.428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20593genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.72.8e-50301602128
       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kg 97 
                pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+    +g
  EMT20593  30 LPGYRFHPTDEELVTFYLRRKVAKKSLRI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAaaggSG 129
               69***************************.99***************445556889**************************************9988778 PP

       NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  EMT20593 130 VSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 160
               88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.47129188IPR003441NAC domain
SuperFamilySSF1019412.62E-5529187IPR003441NAC domain
PfamPF023659.1E-2531160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSAIEMEKAT SDGEVVLGAG DEEDDDDVVL PGYRFHPTDE ELVTFYLRRK VAKKSLRIEV  60
IREMDIYKHD PWDLPKASTV GGEKEWYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDRPI  120
YSAAAGGSGV SIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPAAAPATNA SPSMQEAEVW  180
TICRIFRRTI TYRKQQTWRP APAPSTAITA ADSSSNTGSF ESSEGGDEYM NCLQAPAAAA  240
PCIPQQQHQY VSQTGTVNSG NFFYRDTMHN QQFQGQWNAP PAGPMPEQKP QNPLSTADSF  300
HQNEHSLAVA TNDFHKVEAL DGYLEEIARM MEVTDPAGFY DYRSYGSSAG NRGPSFERTL  360
HSSAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-463119417174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3604320.0AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167538.10.0transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK558e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A453LXU40.0A0A453LXU4_AEGTS; Uncharacterized protein
TrEMBLN1R4A60.0N1R4A6_AEGTA; NAC domain-containing protein 42
STRINGEMT205930.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-76NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]