PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20366
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 918aa    MW: 103693 Da    PI: 9.5644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20366genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.8e-14521291598
               -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                l +p kf+++++g+   s  ++le ++g+ ++v+    k  +++vl++GW  Fv+  +Lk+g f+vF+++g+s f  +v +f+
  EMT20366  52 VLAIPQKFVQNFKGQ--ISEVIKLEAPDGNIYNVQA--IKDLNKIVLGSGWGVFVRFYELKAGYFLVFRYIGDSHF--KVLIFD 129
               589******888888..7779***************..999999****************************9999..887775 PP
2B347.43.6e-152092881499
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               + + +p kf++++ g    sk ++le ++g+++++++  ++  ++++l++GW  F++a +Lke D +vF+++g+s f  +v +f+ 
  EMT20366 209 HEMNIPEKFVNNFRGR--ISKVMKLEAPDGNVYNIQV--TNDLNKITLRSGWAAFASAYELKEHDLLVFSYTGNSHF--RVLIFDP 288
               6799******888766..7899***************..**********************************9999..9999885 PP
3B336.31e-11410493994
               HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
        B3   9 dvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                +l sg lv+ k++a+++     e++ +tl + ++++ W  +l+++  + + +l++GW+ Fv  n+L+e D++vF+++++  e ++vv
  EMT20366 410 TSL-SGSLVICKDYAAKYLPH--EDQFITLCHpRKSNIWLDNLKVTTDG-SGMLSAGWSCFVLHNELRESDVCVFEVSKSaGEMTMVV 493
               333.466***********423..344677777477799*9999654444.458***********************887544444444 PP
4B349.95.6e-166277141199
               HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                k+++l++p kfa++h ++++++  l l+  ++++W  ++ y   ++++   + W +Fv++n+L+eg ++vF+l++  s++ + v+vf k
  EMT20366 627 IKNNLLTFPEKFAAKH-LVERSHDILLLRPNRSETWCARYYYHPEKQGFS-YSSWTKFVRDNKLREGHVCVFELIKGvSKAMMIVHVFTK 714
               6899***********9.4555555566666889*******9999998875.569*********************888***999999965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.48E-1732129No hitNo description
PROSITE profilePS5086310.58838131IPR003340B3 DNA binding domain
SMARTSM010194.2E-545131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-1751129IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1851133IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-1252128IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-21192291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-19193291IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.561196289IPR003340B3 DNA binding domain
CDDcd100171.06E-16197287No hitNo description
SMARTSM010192.4E-7199289IPR003340B3 DNA binding domain
PfamPF023621.2E-12209287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-16397494IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-17400496IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.701401497IPR003340B3 DNA binding domain
CDDcd100171.68E-9401495No hitNo description
SMARTSM010190.0016404497IPR003340B3 DNA binding domain
PfamPF023627.5E-9409494IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-15609712IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15610712IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-7616714IPR003340B3 DNA binding domain
PROSITE profilePS5086311.674617715IPR003340B3 DNA binding domain
PfamPF023622.1E-14626714IPR003340B3 DNA binding domain
CDDcd100176.37E-14632712No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MSKITGVVTA SAANPFKDVR AAMHIIIGVI WMIPRSISSS AWLAISKKKW QVLAIPQKFV  60
QNFKGQISEV IKLEAPDGNI YNVQAIKDLN KIVLGSGWGV FVRFYELKAG YFLVFRYIGD  120
SHFKVLIFDF ASCCEKEVFH VLMNCGPNAQ EKDTRLDRSL LGERRCQNGG SSNSESHRRC  180
EHCDVHFYWH HMDDRQKHFL RFMVGDFLHE MNIPEKFVNN FRGRISKVMK LEAPDGNVYN  240
IQVTNDLNKI TLRSGWAAFA SAYELKEHDL LVFSYTGNSH FRVLIFDPSG CEKELFRIVM  300
NHTPNVQKGG ISHDQLFLKE TRRRDGGSRD NNPRKTKKMT LLDSPSPKSA EGVTSPEDTM  360
NSSGPPETTE PRYVLATGCN LTTAQKAQID TLVKKIRPVI PFYITAMNKT SLSGSLVICK  420
DYAAKYLPHE DQFITLCHPR KSNIWLDNLK VTTDGSGMLS AGWSCFVLHN ELRESDVCVF  480
EVSKSAGEMT MVVHSLEGGH HLQGKEPESQ NKCDFPVKGK AIKEAESDHK NAESKSNYYY  540
SKYAKGLNGE ELEEIFRSAL IQQGNVGKAI KEAESDHKHA ESKSNYYYSK YAKGLNGEEL  600
EEIFRSALIQ QGNVVYVTIL GKNQVRIKNN LLTFPEKFAA KHLVERSHDI LLLRPNRSET  660
WCARYYYHPE KQGFSYSSWT KFVRDNKLRE GHVCVFELIK GVSKAMMIVH VFTKVDGSQR  720
NLSLLASTWY SMEVSDYHAN LVIHSPSNHE SKTFIGVLRH ALSLNVNKTL RYMIGHVFMS  780
CPNLSITIPK STSSRRKIEQ GGDTDRLREA GGRRDLHILY TGFQARRDAL RGDHRRILVG  840
TMPGLAALVV APQLAPFSTT AAAHHRRRTG LSREAGNLLV RSSLVILITL LSLVTLGHVG  900
EVEPRHPHQA ISIHGQAY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3571060.0AK357106.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1046E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168823.10.0B3 domain-containing protein LOC_Os12g40080-like
TrEMBLR7WCQ00.0R7WCQ0_AEGTA; B3 domain-containing protein
STRINGEMT203660.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-18B3 family protein