PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20279
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 562aa    MW: 62685.6 Da    PI: 10.6533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-1382131255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               r+ h + Er RR+r+ + f +L  llP++   p  K++K++i+ +A++YIksL+
  EMT20279  82 RELHIITERERRRRMSEMFTKLHGLLPTL---P-DKVDKSSIVMEAIHYIKSLE 131
               7889************************6...3.9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1478135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.70480130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1282132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1082131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-786136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-595131No hitNo description
PROSITE profilePS5147314.135415533IPR002902Gnk2-homologous domain
PfamPF016578.8E-8440529IPR002902Gnk2-homologous domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MAKDNDNNAP PATSSDSMSS GKGSKGSKAS SRLLLGGAID KGKGVPKVEE EEEGCRSKGK  60
IMTAPVVAAR RDGRSGGRRG DRELHIITER ERRRRMSEMF TKLHGLLPTL PDKVDKSSIV  120
MEAIHYIKSL EGTTWSGPNV VLSLSGIYAY IHMSVGRRPG VLTMVTAVLE KHGIDVVTTG  180
ISSDRSQCMY TIQARINGMS NQFGDNVACD DIYKLAVSEI MLLCLQDLVA LLLLECPITL  240
FKLDKYHYYN ASDHRSNKLK GLSRVMISQH ERAKGQFQNR RLGRANRQLS NYQANGAQPH  300
HALPPPPRYA TNFRQRPVGR VRVTGGISGT VPQVHGLHRR PVRAQQHVQV QPGGPRCGAR  360
RRGRRERRVR QGEHRRGTRR RLRPGAVPRR LHRPQPHGRP PRRFSGEDFL SALTEQPRCS  420
GWSDSGESGW DAAQLLAERV EELMKETIKH AAATAKRYGT GRVWVRGRAE AADMEYVLAQ  480
CTPDLTEAEC WSCLNDTRGK LQTSSMHDKV PTSQYGGRLV GVRCSLRYER VLFFEETSST  540
LQLHKPKVCA MGLSRTHLDD VT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363381RRERRVRQGEHRRGTRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731551e-128AK373155.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022J13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR7WGH10.0R7WGH1_AEGTA; Transcription factor bHLH95
STRINGEMT202790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-10bHLH family protein