PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB

Protein Properties

Length: 341aa MW: 37090.2 Da PI: 9.0302

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT20255	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++++G +W++ ++ g+ R++k+c++rw +yl EMT20255 16 RGSWTPEEDMRLIAYIHKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	56.2	8e-18	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e l++++++lG++ W++Ia++++ gRt++++k+ w+++l EMT20255 69 RGNFTVEEEETLIKLHNMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-23	7	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.279	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	1.39E-30	13	110	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-16	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	1.41E-11	18	63	No hit	No description
PROSITE profile	PS51294	24.945	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-26	67	118	IPR009057	Homeodomain-like
SMART	SM00717	6.7E-16	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-16	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-12	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGKGRAPCCA KVGLNRGSWT PEEDMRLIAY IHKYGHANWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDLKRG NFTVEEEETL IKLHNMLGNK WSKIAACLPG RTDNEIKNVW NTHLKKRVAA 120 SAGEQKKGGA KGKKKTTCVD VPAPSPSPSP SSSTTTTTTT TTNCSSGESG EQSNTSNELE 180 FELDKIEIPM LDLGFDLDML LDTVTNTHCP VISSAPTSTC SSASPPPQNG DRPDKISHSN 240 TTFKGVIPGP EARCTGSLIL EVVFGSPDNF RSEKLNFDIA PFRSGYQALL GRAAFARFNA 300 VPHYASLKLK MSGPRGIITI SGNIERSLRA EECATALTAE H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-27	14	118	2	105	C-Myb DNA-Binding Domain
1msf_C	1e-27	14	118	2	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00249	DAP	Transfer from AT1G79180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248649	0.0	AK248649.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178a22, mRNA sequence.
GenBank	AK369689	0.0	AK369689.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2095N02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185012.1	1e-164	myb-related protein Zm1-like
Swissprot	P20024	1e-79	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	R7WFT2	0.0	R7WFT2_AEGTA; Myb-related protein Zm1
STRING	EMT20255	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	4e-69	myb domain protein 63

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]