PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20151
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 440aa    MW: 49444.4 Da    PI: 6.0765
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20151genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.4e-11571371295
               HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               + + +++  + a +h  ++++e   +++le ++grs+ vk+      g +vl++GW +Fv+a++++++ ++ F + g+s+fe +++
  EMT20151  57 ADH-MRIRPPVA-SHlrNLITEF-DKIQLEAPNGRSYPVKI--GWEFGDIVLRSGWHDFVEAHHIEQNYSIRFVYRGNSSFEVHIS 137
               444.77777777.4457666555.49***************..5555679*******************************77665 PP
2B3421.7e-133404354100
               E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
        B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
               v t+sdv +   l+l k++a+++ + +++   l l   + r W+ +l  rk+ ++ ++ + W +F ++ gL+e D+++F+l++rs+ +++v+v+rks
  EMT20151 340 VITSSDVATAPSLYLGKDYASACLLTQPGRLRLLL-EGDERDWDCRLGLRKSNKTWWIDRSWPKFISDVGLEEDDICLFELTDRSSLTMKVHVIRKS 435
               678999999999***********777666534443.4588*******99****9****************************99**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1344140IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.89747140IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-1347140IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.005848140IPR003340B3 DNA binding domain
PfamPF023624.1E-958136IPR003340B3 DNA binding domain
CDDcd100175.39E-1079136No hitNo description
Gene3DG3DSA:2.40.330.104.7E-9197307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-9202306IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.006206302IPR003340B3 DNA binding domain
SMARTSM010190.33206302IPR003340B3 DNA binding domain
PROSITE profilePS5086310.447337435IPR003340B3 DNA binding domain
SMARTSM010196.4E-4337435IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-12339435IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-11340433No hitNo description
PfamPF023622.2E-11340434IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-14340438IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MTVDGVNEGC GEGCDVEGCE CGADGCEECE WWRLHCYWSH AGDRPRHFSL VAGDDFADHM  60
RIRPPVASHL RNLITEFDKI QLEAPNGRSY PVKIGWEFGD IVLRSGWHDF VEAHHIEQNY  120
SIRFVYRGNS SFEVHISGSS GHDNSSPPPP RDRHVLNEQV VPDPAHVQTS INIDYTAFPG  180
TRLSHEQEKK VLELAQSSMR SEFRLHVAAV NKRNANGDCH VYIPLTLLDS FKEGITEAPI  240
QLKAHSNDMI YVVGASKHGD DQVILQSGLS HFVDGHRMQD NDLLVFRSKG KARLEVLVLD  300
PSGCEKTWFD MGNSSNVSRE GRRAQAQNMA STSFGWAKSV ITSSDVATAP SLYLGKDYAS  360
ACLLTQPGRL RLLLEGDERD WDCRLGLRKS NKTWWIDRSW PKFISDVGLE EDDICLFELT  420
DRSSLTMKVH VIRKSDIPAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163991.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLN1R1B00.0N1R1B0_AEGTA; B3 domain-containing protein
STRINGEMT201510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4908122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.19e-08B3 family protein