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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT20130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | B3 | ||||||||
Protein Properties | Length: 215aa MW: 25050 Da PI: 6.7408 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.3e-19 | 105 | 198 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k++t+ +++ +++++pk+f+e+ + ++l d+ ++ + ++ +k +++++l+kGW+eF+ ++L+ gD +vF+l+++ +f +v +fr+ EMT20130 105 FVKTMTHVCASRAKQMMIPKHFIEHLpA----HDEAVVLVDQADDEFHMMCNASKEGRHCYLSKGWREFAVHHDLENGDCLVFQLIDSAKF--KVYIFRA 198 8999999999999**********55532....3457***************99999999**************************986666..9999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 101 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.44E-22 | 101 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.46E-26 | 103 | 197 | No hit | No description |
SMART | SM01019 | 2.4E-13 | 105 | 199 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.858 | 105 | 199 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-18 | 105 | 198 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEESNSYEEQ RRRQIEENRR KLDELRLHHL SAAVREAAAR PKPNPNPKPR PPNYLKGAQQ 60 RDDQGVYAAY DARIWKGPTD EERAAAVAKA EELQRRIHRI RRPAFVKTMT HVCASRAKQM 120 MIPKHFIEHL PAHDEAVVLV DQADDEFHMM CNASKEGRHC YLSKGWREFA VHHDLENGDC 180 LVFQLIDSAK FKVYIFRANP DYESDQTSDD SEDEQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364094 | 3e-51 | AK364094.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2021K08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182055.1 | 1e-145 | B3 domain-containing protein Os06g0194400-like | ||||
TrEMBL | R7WFN7 | 1e-159 | R7WFN7_AEGTA; B3 domain-containing protein | ||||
STRING | EMT20130 | 1e-160 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 5e-17 | B3 family protein |