PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT20093

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 367aa MW: 38851.2 Da PI: 8.8421

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT20093	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	2	50	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N+ ++ Lr+l+P++ ++ + + a+i+ A++++k+L+ EMT20093 2 THIAVERNRRRQMNEYLAALRSLMPES---YAHRGDQASIVGGAIDFVKELE 50 8************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.964	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-16	1	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.52E-13	1	54	No hit	No description
Pfam	PF00010	4.8E-10	2	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-14	2	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-10	4	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MTHIAVERNR RRQMNEYLAA LRSLMPESYA HRGDQASIVG GAIDFVKELE QLLQSLEAQK 60 RTLLAQQQQD HKPPPIRDAM PSPSITVTAA ATTTTRSGSG EGKQAAATRD GMSPPFAGFF 120 TYPQFVCRLP PRDDADDHAG AADIEVTLVE THASVRVMAP RRPGQLLRMV AGMEALRLTV 180 LHLNVTTLGS LALYSLSVKV EEGCGLTTAD DIAASVHHVL CLVDAEATSQ RLLAGGQQEI 240 SSQRHAHLPP HDAAGQGRPM RSTVSKGPPA PASADVARSR PKLGRDAGCC WIWRTGAPSG 300 EPEAGVGRRT LPGSRLGTGV ATCAATSHAR VGSGAHGRDP MSVVKVPRVL ASVPAAEIRH 360 SVIAADV

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MTHIAVERNR RRQMNEYLAA LRSLMPESYA HRGDQASIVG GAIDFVKELE QLLQSLEAQK  60
RTLLAQQQQD HKPPPIRDAM PSPSITVTAA ATTTTRSGSG EGKQAAATRD GMSPPFAGFF  120
TYPQFVCRLP PRDDADDHAG AADIEVTLVE THASVRVMAP RRPGQLLRMV AGMEALRLTV  180
LHLNVTTLGS LALYSLSVKV EEGCGLTTAD DIAASVHHVL CLVDAEATSQ RLLAGGQQEI  240
SSQRHAHLPP HDAAGQGRPM RSTVSKGPPA PASADVARSR PKLGRDAGCC WIWRTGAPSG  300
EPEAGVGRRT LPGSRLGTGV ATCAATSHAR VGSGAHGRDP MSVVKVPRVL ASVPAAEIRH  360
SVIAADV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174319.1	1e-174	transcription factor bHLH94-like
TrEMBL	R7WDB4	0.0	R7WDB4_AEGTA; Transcription factor bHLH96
STRING	EMT20093	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-55	bHLH family protein