PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT20023

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Trihelix

Protein Properties

Length: 440aa MW: 50328.2 Da PI: 7.3369

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT20023	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.6	2.1e-25	121	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt ++v++Li+a ++++e+ ++++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++ ++++ +++d+++ EMT20023 121 KWTGSMVKLLITAASYTGEDPGADQgrrrniaivQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGtACSVVENPALLDSMH 216 7*******************987778889999******************************************559999****9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-18	119	242	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MEGSNLPTGN MMQGIPYSGL NVHGNSMQMH SSSSGKQLFN QSQMLGSFAM PINRATAPDN 60 PGFQFGEHEK KDRHHHHQQQ QQHSHYSKNS ISDEEEHDMT EDVTDTQNDK GKKGSAWHRM 120 KWTGSMVKLL ITAASYTGED PGADQGRRRN IAIVQKKGKW KAISKVMGER GCSVSPQQCE 180 DKFNDLNKRY KRLTDILGRG TACSVVENPA LLDSMHHLSD KMKEDARKIL NSKHLFYEQM 240 CSYHNNNRVN LPEDLALQHS LQVALRCKEE HDLRRDASAD PEEGEQSADS DYEEHDKEHQ 300 TVHTNLRDSS MNKRMCHAVD HGDVGFVTSS SNGVSGRFNP HDITLDINNA IPGGANLSFV 360 RKDLTSQQVE LQKHRLQAQE QKLEVAKQRL KWERFRMKKD REIERMTLEN EQMMLQHKRL 420 ELQLRHNELE LELKGNANHA

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MEGSNLPTGN MMQGIPYSGL NVHGNSMQMH SSSSGKQLFN QSQMLGSFAM PINRATAPDN  60
PGFQFGEHEK KDRHHHHQQQ QQHSHYSKNS ISDEEEHDMT EDVTDTQNDK GKKGSAWHRM  120
KWTGSMVKLL ITAASYTGED PGADQGRRRN IAIVQKKGKW KAISKVMGER GCSVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TACSVVENPA LLDSMHHLSD KMKEDARKIL NSKHLFYEQM  240
CSYHNNNRVN LPEDLALQHS LQVALRCKEE HDLRRDASAD PEEGEQSADS DYEEHDKEHQ  300
TVHTNLRDSS MNKRMCHAVD HGDVGFVTSS SNGVSGRFNP HDITLDINNA IPGGANLSFV  360
RKDLTSQQVE LQKHRLQAQE QKLEVAKQRL KWERFRMKKD REIERMTLEN EQMMLQHKRL  420
ELQLRHNELE LELKGNANHA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366936	0.0	AK366936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048K05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174820.1	0.0	uncharacterized protein LOC109760399
TrEMBL	A0A3B6JEW3	0.0	A0A3B6JEW3_WHEAT; Uncharacterized protein
TrEMBL	A0A453HMJ3	0.0	A0A453HMJ3_AEGTS; Uncharacterized protein
TrEMBL	N1R485	0.0	N1R485_AEGTA; Uncharacterized protein
STRING	EMT20023	0.0	(Aegilops tauschii)
STRING	Traes_4DS_BD48EEAD8.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	5e-98	sequence-specific DNA binding transcription factors