PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT19562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 299aa MW: 32034.2 Da PI: 6.6689 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.4 | 3.3e-10 | 102 | 127 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ EMT19562 102 FKTKLCCKFRA-GTCPYVTNCNFAHGM 127 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 175 | 200 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ EMT19562 175 YKGRHCKKFYTEEGCPYGDACTFLHD 200 78888********************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 99 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.45E-8 | 99 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 101 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 102 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 173 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-9 | 173 | 202 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 174 | 202 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.3 | 174 | 201 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MDYTNAIHII PDAAGPESWA NSAAPPGGDS GIWATEDDYS QWNGEQGLSG GGYGGDRNSS 60 QPHSRAGSEQ PPPGKKPRGS GPSGGGDAGS TSKSRAIGKM FFKTKLCCKF RAGTCPYVTN 120 CNFAHGMEEL RKPPPNWQEI VAAHEEATEQ REEHQIPIMT SSNVVPGDSV SGRAYKGRHC 180 KKFYTEEGCP YGDACTFLHD EQSKAQLHKY GGGLVDIDGR DIASTPDSKQ AAASSKLPVE 240 TAAASTAVPP HADVYHLGSQ SQRSALASQR SGQLQRPIQK WKGPDKISRI YGDWIDETD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK373307 | 0.0 | AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198349.1 | 1e-132 | zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-94 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | N1R467 | 0.0 | N1R467_AEGTA; Zinc finger CCCH domain-containing protein 56 | ||||
STRING | EMT19562 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32360.1 | 9e-59 | C3H family protein |