PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19029
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 88aa    MW: 9872.95 Da    PI: 7.5204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19029genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091762345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++ E + + +a + +G g    W+++a+ mg ++++++++ ++q
         EMT19029 17 EWSKKENKMFEEALAYYGEGapnLWEKVASAMGGTKSAEEVRRHFQ 62
                     7********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9691065IPR017877Myb-like domain
SMARTSM007171.2E-71467IPR001005SANT/Myb domain
SuperFamilySSF466895.38E-121672IPR009057Homeodomain-like
PfamPF002491.6E-81762IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-51771IPR009057Homeodomain-like
CDDcd001672.71E-51762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSGSSSRST SPSSGSEWSK KENKMFEEAL AYYGEGAPNL WEKVASAMGG TKSAEEVRRH  60
FQILIDDVNN IEYGRIPFPK YKTQGFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-21985277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612039e-90AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176359.11e-59protein RADIALIS-like 3
SwissprotQ6NNN03e-24RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A3B6A1M92e-58A0A3B6A1M9_WHEAT; Uncharacterized protein
TrEMBLA0A452ZY512e-58A0A452ZY51_AEGTS; Uncharacterized protein
TrEMBLR7WFJ12e-58R7WFJ1_AEGTA; Uncharacterized protein
STRINGEMT190294e-59(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-23RAD-like 1