PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18734
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 301aa    MW: 34674.3 Da    PI: 6.939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18734genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-061131251426
               --TTTTT-SS-SS CS
   zf-CCCH  14 tCkyGdrCkFaHg 26 
               tC +G rC+FaHg
  EMT18734 113 TCTRGLRCRFAHG 125
               7***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEMDMYKMVV QENGEVTYQL TDPTTWGAWA HDGHRLWASM PEDFWLYEYK VRMCPQPYSH  60
DWTACPYAHK EERARRRDPR RFNYIAISCP EYRVNARTHA QLRLAGAGHP PPTCTRGLRC  120
RFAHGVFELW LHPSRFRTRK CDAGTRCQRQ ICFFAHFTRE LRVEDSMAAF TAPAVPSSTF  180
AMPRTPPHIL QRAPSTSVTR LQDVPTPQLF DDVTLQATPN RLRMLSLYYA ITGDDVFSSP  240
IATATAAAVA AAATTMPTMR VPLMAYEEEE EEDAKSVHYA NDEDSLLNDY PHRDLIMDFM  300
R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192383.10.0zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A453ARN40.0A0A453ARN4_AEGTS; Uncharacterized protein
TrEMBLR7WF990.0R7WF99_AEGTA; Zinc finger CCCH domain-containing protein 54
STRINGEMT187340.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1118956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.13e-36C3H family protein