PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 33706.1 Da PI: 6.8542 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.3 | 2.4e-21 | 109 | 173 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnhe 59 Dgy+WrKYGqK+++ +++pr+YYrCt + gCp+k+ v+r+++d++ +++Y +eH ++ EMT18621 109 DGYQWRKYGQKQIEAAKHPRNYYRCTNStnqGCPAKRTVQRNDDDGSddgrpRYTVVYISEHSCK 173 9************************9888889***********9986333345789999999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 29 | No hit | No description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-23 | 93 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-21 | 101 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-28 | 107 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.141 | 109 | 153 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-22 | 109 | 173 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MQLQRREREL VAQLHELLFP STSSGASSCS GLAADLYWEH GSPQVKATAS CGGGKRRGGR 60 KRVREDERHE EGQGQRGGAA TATKATTRCR RKKQGATTTT LVTTVPDFDG YQWRKYGQKQ 120 IEAAKHPRNY YRCTNSTNQG CPAKRTVQRN DDDGSDDGRP RYTVVYISEH SCKATESAAV 180 PVILETTVRT DTAAAPDVAV VPGSSSGAIS SETQSPASSS DITWSSGGSD GGANVPPRER 240 DDYSRLFAIE DDCWGWNASP PAPAAAAALL QEMDFDGPIR SPVHVAAADG SWISDLFVNE 300 PPFVLNSCHL FGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-15 | 109 | 173 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU669662 | 1e-150 | EU669662.1 Triticum aestivum WRKY32 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196414.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | N1R193 | 0.0 | N1R193_AEGTA; WRKY transcription factor 55 | ||||
STRING | EMT18621 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66550.2 | 2e-14 | WRKY DNA-binding protein 67 |