PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

EMT18588

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

GRAS

Protein Properties

Length: 646aa MW: 72184.5 Da PI: 6.9775

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18588	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	333	5.5e-102	263	635	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++lL++cAeav+++d ++a lL+++++++ p+gd+ qRla yf+e+L+arla+++ ++y+++++ + + +++e +++++l ++ +lk+s N+ I EMT18588 263 ETLLIRCAEAVATNDRSNAGDLLKKIKQHSLPTGDARQRLAYYFAEGLEARLAGTGRQMYHSITMANHT--STVELFKSYHLCIAACCFLKVSLNFSNKNI 361 789********************************************************99888887..599999******************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ++av+g +++Hi+ ++++ G+QWp Ll+ La+R++gpp++RiTg+ sp++g +++ +et++rL+ A+++gvpf+f++ + +le+++ e+L+++p+E+ EMT18588 362 YNAVAGRKKLHIVHYGVNDGFQWPDLLRWLADREGGPPEVRITGIISPQPGpcPAKQAKETKRRLSYCARQFGVPFKFHA-IIAKLEAVHAEDLDIDPDEV 461 ************************************************99**********************.6999************ PP GRAS 202 laVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 l+Vn +++ +l+des++ +e++rd vL+++k+++P +++++ + ++s+ F++rf +al+ ++a fd++e+++ +++e+r vEr++++r+++n++ac EMT18588 462 LVVNNMFHFRTLMDESLTfdMENPRDLVLNTIKKMKPSMLIHAAVNGAYSSAFFMTRFRQALNNFTAQFDMMETTMMQNKEKRLLVERHIFARSVMNIIAC 562 ***********98622677************************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eg +r+er +++++W++r ++aG+++++l+ +++k k ++k + + ++++e++ +l+lgWk+r L+++S W EMT18588 563 EGPDRVERPQNYKEWHARNQRAGLRQLSLDPDIVKMLKDQVKKQYHKHFMIDEDQRWLLLGWKGRVLYALSTW 635 *****************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.358	236	616	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-99	263	635	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MPAMAAAQEE PLGLVKPAPP PPPPSIFLDQ PSMTNGDSQS QQPQDDLALA YISRMLMEED 60 IIDKFFYQHP EHPTLLQAEQ PFAEILSASG ITTAGAHGSS ALLPSQGNNT GIMASGFLSS 120 EVRSQALILN GTVTAEEPSS GVTMGDLSSM AFFKGMEEAN SFLPTVNVMV DARARKKRSG 180 MDGETEACMG RSSKQIAVRV LAHDDSAEED TALELDLLIL NGYNMHSNET MKERGDQAAH 240 QSICRKAPCV RHSARQKVVA DLETLLIRCA EAVATNDRSN AGDLLKKIKQ HSLPTGDARQ 300 RLAYYFAEGL EARLAGTGRQ MYHSITMANH TSTVELFKSY HLCIAACCFL KVSLNFSNKN 360 IYNAVAGRKK LHIVHYGVND GFQWPDLLRW LADREGGPPE VRITGIISPQ PGPCPAKQAK 420 ETKRRLSYCA RQFGVPFKFH AIIAKLEAVH AEDLDIDPDE VLVVNNMFHF RTLMDESLTF 480 DMENPRDLVL NTIKKMKPSM LIHAAVNGAY SSAFFMTRFR QALNNFTAQF DMMETTMMQN 540 KEKRLLVERH IFARSVMNII ACEGPDRVER PQNYKEWHAR NQRAGLRQLS LDPDIVKMLK 600 DQVKKQYHKH FMIDEDQRWL LLGWKGRVLY ALSTWVADDA SGSQLE

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MPAMAAAQEE PLGLVKPAPP PPPPSIFLDQ PSMTNGDSQS QQPQDDLALA YISRMLMEED  60
IIDKFFYQHP EHPTLLQAEQ PFAEILSASG ITTAGAHGSS ALLPSQGNNT GIMASGFLSS  120
EVRSQALILN GTVTAEEPSS GVTMGDLSSM AFFKGMEEAN SFLPTVNVMV DARARKKRSG  180
MDGETEACMG RSSKQIAVRV LAHDDSAEED TALELDLLIL NGYNMHSNET MKERGDQAAH  240
QSICRKAPCV RHSARQKVVA DLETLLIRCA EAVATNDRSN AGDLLKKIKQ HSLPTGDARQ  300
RLAYYFAEGL EARLAGTGRQ MYHSITMANH TSTVELFKSY HLCIAACCFL KVSLNFSNKN  360
IYNAVAGRKK LHIVHYGVND GFQWPDLLRW LADREGGPPE VRITGIISPQ PGPCPAKQAK  420
ETKRRLSYCA RQFGVPFKFH AIIAKLEAVH AEDLDIDPDE VLVVNNMFHF RTLMDESLTF  480
DMENPRDLVL NTIKKMKPSM LIHAAVNGAY SSAFFMTRFR QALNNFTAQF DMMETTMMQN  540
KEKRLLVERH IFARSVMNII ACEGPDRVER PQNYKEWHAR NQRAGLRQLS LDPDIVKMLK  600
DQVKKQYHKH FMIDEDQRWL LLGWKGRVLY ALSTWVADDA SGSQLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-43	266	635	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	289	LKKIKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172193.1	0.0	scarecrow-like protein 9
TrEMBL	A0A453HSI2	0.0	A0A453HSI2_AEGTS; Uncharacterized protein
TrEMBL	A0A453HTK8	0.0	A0A453HTK8_AEGTS; Uncharacterized protein
TrEMBL	R7WAD8	0.0	R7WAD8_AEGTA; Uncharacterized protein
STRING	EMT18588	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-124	GRAS family protein