PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18570
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NF-YB
Protein Properties Length: 307aa    MW: 33131.3 Da    PI: 4.8621
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18570genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB68.31.4e-211193385
     NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
              ++d  lP + +++i+k++lP + ++++d+++++ ec +efi +++se++d c r+++kti+++ ++ al +lGf++yve++ +
  EMT18570 11 KEDVSLPKSTMTKIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSESNDVCSRDDKKTIAPEHVIRALQDLGFKEYVEEVYA 93
              67999**************************************************************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-358149IPR009072Histone-fold
SuperFamilySSF471134.37E-3312149IPR009072Histone-fold
PfamPF008083.8E-181579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MTKIIKEMLP PDVRVARDTQ DLLVECCVEF INLLSSESND  60
VCSRDDKKTI APEHVIRALQ DLGFKEYVEE VYAAYEQHKL ETLSILTFPL AQDSPKATKF  120
TGIEMTEEEA VAEQQRMFAE ARARMNNGAA KPKEPALEPQ NQPQQPPQPH LQLHPQAQQP  180
PQPQPQLHHP QSQQPLHPQL QPYTQAPPQQ PLHPQLQPYT QAPPQQPLQP PLQLYPQAQP  240
EQPLQPQSSG STTGTCVIST AAPSATGTTA AATSAPAIPA ISTAAPSATP ADASAAAAAA  300
ATSTPAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-301214212133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0092340.0BT009234.1 Triticum aestivum clone wle1n.pk0106.g11:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235094.11e-117nuclear transcription factor Y subunit beta
SwissprotP495922e-80NC2B_ARATH; Protein Dr1 homolog
TrEMBLR7WE710.0R7WE71_AEGTA; Protein Dr1-like protein
STRINGEMT185700.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-70nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]