PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ARR-B

Protein Properties

Length: 432aa MW: 48364.3 Da PI: 6.3658

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18523	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33	1.4e-10	194	223	1	31
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPkt 31 kpr+ Wt +LH++F+ea++q+ G ++A+Pk+ EMT18523 194 KPRVTWTIKLHNKFLEAINQI-GLDRAVPKK 223 79*****************.*****97 PP
2	Response_reg	75.5	2e-25	23	131	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l+vdD+++ +++l+ +l++ +y + + ++d++ al++l ++++Dl+++D++mp+mdG++ll+ ir e +lp+i+++ ++ + + ++ Ga+ EMT18523 23 ILVVDDDRVCLKVLEALLRRCNY-QPTPVRDAKTALRMLmaGKQQFDLVITDVRMPDMDGFKLLELIRLEM-DLPVIMISVDCDKRVVMKGIDHGAS 117 89*******************.777899999999999555555******************9976.********************* PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 df +Kp+ el + EMT18523 118 DFMVKPVCTHELKN 131 ****98888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.42E-33	19	141	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	1.2E-37	20	160	No hit	No description
SMART	SM00448	1.8E-29	21	133	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	40.245	22	137	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.3E-22	23	131	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.37E-26	24	136	No hit	No description
SuperFamily	SSF46689	1.33E-5	191	227	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.7E-9	191	223	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.8E-8	194	223	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MGGDRRQMME DAAEDKFPEG LRILVVDDDR VCLKVLEALL RRCNYQPTPV RDAKTALRML 60 MAGKQQFDLV ITDVRMPDMD GFKLLELIRL EMDLPVIMIS VDCDKRVVMK GIDHGASDFM 120 VKPVCTHELK NIWQHVQRWR NPKAISHISD HDNDVQRVQP ATADKSKLSG HKRNAGDDSN 180 KHNESTSIST THRKPRVTWT IKLHNKFLEA INQIGLDRAV PKKKYRLHLK RVNSNPSGDA 240 HERWNSSYNM NNKGNFMHNH EHGRWGASSG DTASWSTNNY GAMGHLAPPM NTQSNFYMGA 300 EAPFISNTTS AGGFTEQMAP FNMASNTSSV GMMLNGSSAL DASRTSTKDT HVVNSERTTS 360 MLHNLQTDDF FSLTQLLDGG DGGSILPMQE GTLDQQPLND QLNEINAFSV DDIFSNMNLE 420 DFTGDDAIVE EA

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MGGDRRQMME DAAEDKFPEG LRILVVDDDR VCLKVLEALL RRCNYQPTPV RDAKTALRML  60
MAGKQQFDLV ITDVRMPDMD GFKLLELIRL EMDLPVIMIS VDCDKRVVMK GIDHGASDFM  120
VKPVCTHELK NIWQHVQRWR NPKAISHISD HDNDVQRVQP ATADKSKLSG HKRNAGDDSN  180
KHNESTSIST THRKPRVTWT IKLHNKFLEA INQIGLDRAV PKKKYRLHLK RVNSNPSGDA  240
HERWNSSYNM NNKGNFMHNH EHGRWGASSG DTASWSTNNY GAMGHLAPPM NTQSNFYMGA  300
EAPFISNTTS AGGFTEQMAP FNMASNTSSV GMMLNGSSAL DASRTSTKDT HVVNSERTTS  360
MLHNLQTDDF FSLTQLLDGG DGGSILPMQE GTLDQQPLND QLNEINAFSV DDIFSNMNLE  420
DFTGDDAIVE EA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3gt7_A	3e-12	23	138	10	130	Sensor protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HE996246	1e-158	HE996246.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_12224.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198970.1	1e-134	two-component response regulator ORR24-like
Swissprot	A2X1N2	9e-68	ORR24_ORYSI; Two-component response regulator ORR24
Swissprot	Q6H805	1e-67	ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBL	R7WA95	0.0	R7WA95_AEGTA; Two-component response regulator ARR12
STRING	EMT18523	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15285	4	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	7e-62	response regulator 10

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]