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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | MYB_related | ||||||||
Protein Properties | Length: 149aa MW: 15950 Da PI: 10.6543 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 87 | 132 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +WT eEd l v+++G+g+W+++a +++ gR++kqc++rw + EMT18370 87 KRPWTVEEDTMLRAKVHEFGKGRWAKVALYFP-GRSGKQCRERWINQ 132 579*****************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.926 | 82 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-16 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 87 | 132 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 87 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-17 | 87 | 139 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-16 | 89 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAASAVGNHY KSFGHGDVAH FVHNDGGASA GVVVVPGTGS RGSGGIREMD PTSFPSYGSS 60 NAPTAIAAPA RVPPRARSSG QGLARLKRPW TVEEDTMLRA KVHEFGKGRW AKVALYFPGR 120 SGKQCRERWI NQLDPNIEVI LPNLNFLTP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188726.1 | 8e-65 | transcription factor MYB46-like | ||||
TrEMBL | R7WE05 | 1e-105 | R7WE05_AEGTA; Myb protein | ||||
STRING | EMT18370 | 1e-106 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22654 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 6e-15 | myb domain protein 3r-4 |