PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18268
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 1178aa    MW: 128341 Da    PI: 7.4344
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18268genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20128183156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  EMT18268 128 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 183
               688999***********************************************998 PP
2START70.73.8e-2342852089174
               EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
     START  89 galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtwvehvdlkg 174
               ++l  m+ae+q+lsplvp R++vf Ry+     +g+w ivd   d  q+        +ss+vR++++pSg++i++ +ng+s+v+wveh+++ g
  EMT18268 428 AFLDAMQAEMQFLSPLVPaREVVFFRYCVHnADEGTWSIVDFPADGFQEELLqqqqqTSSLVRCRRRPSGCIIQDAPNGYSRVVWVEHMEVVG 520
               67889*************************9999*******88775444322333459********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-20110186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-21113186IPR009057Homeodomain-like
PROSITE profilePS5007117.07125185IPR001356Homeobox domain
SMARTSM003891.1E-19126189IPR001356Homeobox domain
PfamPF000465.3E-18128183IPR001356Homeobox domain
CDDcd000861.09E-18128186No hitNo description
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PROSITE profilePS5084830.95337580IPR002913START domain
SuperFamilySSF559617.0E-17340518No hitNo description
CDDcd088753.42E-70341576No hitNo description
SMARTSM002340.0061346577IPR002913START domain
PfamPF018524.4E-18428520IPR002913START domain
SuperFamilySSF559611.51E-15594839No hitNo description
PfamPF048274.5E-1111321178IPR006912Harbinger transposase-derived protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1178 aa     Download sequence    Send to blast
MAAMAAGSSS ADALFASPLM PNPGALAGFM SNSSAMPFHH HFSTNLIPKE EGVMGGLHMA  60
KDEELDLDME MELSGGSGSG HLDGLLSFAD VDDDRDQKPQ HSEPDGAGAG HHPSSSAAAA  120
ASHGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ VKFWFQNRRT  180
QMKAQQDRAD NVILRAENES LKTDNYRLQA AIRNVVCPSC GHAAVIGDMS YEEQNLRIEN  240
ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN VYSRHFAEQQ  300
HGAMDLMALP QQMAAGGHGV AATASYLQGP MTPVVVQEQD KQLVMELAST AAHHLSKMCR  360
TSEPLWARRR GAGPSSGEVM DAEEHVRMLS WPIDSGKQQQ ADVAHAAKTE GTRDSAVVIM  420
NSITLVDAFL DAMQAEMQFL SPLVPAREVV FFRYCVHNAD EGTWSIVDFP ADGFQEELLQ  480
QQQQTSSLVR CRRRPSGCII QDAPNGYSRV VWVEHMEVVG EEKPLQPGFK DHVVWVEHME  540
VVGEEKPLQP VFKDHVAGGA AFGATRWVSV LQRQCERLAS ELARSIADQG VIRTPEARTN  600
MMKLSQRMIT AFCANISASG SQSWTALSDS TDDTVRITTR KNTEPGQPSG VILTAVSTSW  660
LPFSHQQVFE LLADEQQRCQ LEILSNGGSL HEVAHIANGS HPRNCISLLR INSASNSSQN  720
VELLLQESSI HPDGGSLVVF ATVDVDAIQV TMSGEDPSYI PLLPMGFAIF PATSPSPGAT  780
SSDTTSNGET SPGNADEPAT GCLLTVGMQV LASAVPSAKL NLSSVTAINS HICNTIHQIT  840
TALKGAGGGR TEPAPAGRQR DPSPARKGLV KLSLAPTNTN RISPGHFGHA VLAATLPLPP  900
AQKVKDCEAA CMLAPLAGSG GGPSIFRWFW RTDSDRTKGI LLRATPTWIT KPPPKIPTKR  960
SLSFIGGHQK CPDLSECLKS KKRNYLRFVG VQTFTRCLWK SMFSTPQPHG STKGRRVLNR  1020
NRARGHLMLV GDYFRLRCTI QALCPPSISD MATSICCIYH GVRANHDYFI QKKGPIRTIE  1080
FFGYQKCTTT MKMLACGTTA DSWDEYLSMS ESTCLEAMVK FATAVVKAFG PEYLREPTHA  1140
YATRLMATGE AREFTSMLGS LNCMHWKSKN CPYAQQGQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3731770.0AK373177.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3023B13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163828.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLR7W9T90.0R7W9T9_AEGTA; Homeobox-leucine zipper protein ROC3
STRINGEMT182680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7