PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C2H2

Protein Properties

Length: 412aa MW: 45651.1 Da PI: 5.8626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT18191	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	222	243	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+ H EMT18191 222 FCAICGKGFKRDANLRMHMHGH 243 6******************877 PP
2	zf-C2H2	12.3	0.00051	341	354	6	19
TTEEESSHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrH 19 Cg++F+rk+nL +H EMT18191 341 CGTTFTRKDNLFTH 354 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.098	221	243	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.1E-5	221	273	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.074	221	248	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	223	243	IPR007087	Zinc finger, C2H2
SMART	SM00355	71	271	304	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	34	309	331	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MDRGKNIIQD EPPNLSSNPL YYQPSSENLL LDMEMQQPFS ASTLPFDPAP STSIPHMDWN 60 PGTMLDNLSF IEDKIRQAKD VIRSMISDGS QLSTQQQQQP GAFSLHCRTH PFLASPPATV 120 QMANLAASGS GTSSSSVRNR AVSEDHKEEM HSPDYEELFK GLTDYAVEVE GIEIGNSLLV 180 DEHDTKDGNE VGIGIDADSL PPGTYELLQL EEDEILAPQT HFCAICGKGF KRDANLRMHM 240 HGHGDEYKSP AALAKPPRDE SLDHAAIVKR YSCPVAGCKR NRLHKGFLPL KTILCVKNHY 300 KRSHCVKNYT CSRCHAKKFS VMADLKTHEK HCGQVRWVCS CGTTFTRKDN LFTHVGVDGL 360 DSFTEDFLST ENFGSFSFGL GQFDGFPEDN SEGSFMLLPP GHHQSAEKNG ES

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MDRGKNIIQD EPPNLSSNPL YYQPSSENLL LDMEMQQPFS ASTLPFDPAP STSIPHMDWN  60
PGTMLDNLSF IEDKIRQAKD VIRSMISDGS QLSTQQQQQP GAFSLHCRTH PFLASPPATV  120
QMANLAASGS GTSSSSVRNR AVSEDHKEEM HSPDYEELFK GLTDYAVEVE GIEIGNSLLV  180
DEHDTKDGNE VGIGIDADSL PPGTYELLQL EEDEILAPQT HFCAICGKGF KRDANLRMHM  240
HGHGDEYKSP AALAKPPRDE SLDHAAIVKR YSCPVAGCKR NRLHKGFLPL KTILCVKNHY  300
KRSHCVKNYT CSRCHAKKFS VMADLKTHEK HCGQVRWVCS CGTTFTRKDN LFTHVGVDGL  360
DSFTEDFLST ENFGSFSFGL GQFDGFPEDN SEGSFMLLPP GHHQSAEKNG ES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977257.1	1e-158	zinc finger protein STAR3
Swissprot	Q943I6	1e-103	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	N1R152	0.0	N1R152_AEGTA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRING	EMT18191	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	2e-88	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]