PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18170
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 685aa    MW: 76267.4 Da    PI: 9.5517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18170genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-14681511099
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                + ++ +v+p + ++++ggk   s t++le ++g+ + v +   kk +r vl++GW+ Fv+an+++++  ++F+  g s+f  +v++f++
  EMT18170  68 GNFKHSMVIPERLVDHFGGK--ISGTIQLEAPNGQMYVVGV--AKKMNRSVLQSGWEAFVHANQIQDNSYLMFRNLGISCF--KVTIFDS 151
               445667********888888..6779***************..*******************************7777999..9999986 PP
2B341.91.8e-134195021396
               TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
        B3  13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
               +  lv+pk++a++h    +es+ ++l+ +   ++W   + +r++  +yvl + W eFv++n+L+egD+++++ ++r ++++++++v
  EMT18170 419 QPALVIPKRYAAAHFP--TESQNIVLTLPGVkKKWHPLFHVRRGNIGYVLYGRWLEFVRDNRLREGDICLLQPINRgEGRRFMLTV 502
               4569**********74..4566777777544499*999988999999*************************88776777666554 PP
3B338.22.5e-126166813199
               .--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  31 eesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +++tltl+   +++ W+v++    + +r+v ++GW+eF+ +n+L++gD ++++ + +++  + v+++r+
  EMT18170 616 DGKQTLTLREaGWSKAWRVEM----RHRRMVPAGGWREFAADNRLQAGDLCLLEPVADKRLAMAVHIIRR 681
               34568999887899*******....334578999********************99999999*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1658153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1658152IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.06859152IPR003340B3 DNA binding domain
SMARTSM010195.8E-562152IPR003340B3 DNA binding domain
PfamPF023622.0E-1269151IPR003340B3 DNA binding domain
CDDcd100177.32E-1469150No hitNo description
Gene3DG3DSA:2.40.330.102.9E-13236340IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-13237341IPR015300DNA-binding pseudobarrel domain
CDDcd100179.76E-13242341No hitNo description
PROSITE profilePS508638.29244343IPR003340B3 DNA binding domain
SMARTSM010199.4E-4244343IPR003340B3 DNA binding domain
PfamPF023621.9E-8248342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-16398493IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-18400500IPR015300DNA-binding pseudobarrel domain
CDDcd100173.67E-17404503No hitNo description
SMARTSM010193.7E-5406508IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053407508IPR003340B3 DNA binding domain
PfamPF023621.1E-11411501IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-13579683IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-11582684IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-4590682IPR003340B3 DNA binding domain
CDDcd100171.16E-10609680No hitNo description
PfamPF023626.2E-10616681IPR003340B3 DNA binding domain
PROSITE profilePS5086310.391620682IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MAHTSLVFFS ALPPPWQHVH VDMPSAPRRR AGPAGVRSAG AGGKAPVVMS NPCECSRRRA  60
KFIMQMRGNF KHSMVIPERL VDHFGGKISG TIQLEAPNGQ MYVVGVAKKM NRSVLQSGWE  120
AFVHANQIQD NSYLMFRNLG ISCFKVTIFD SNGEERISCR AGAKISTHVE KASTYRADIS  180
SSSFDGASDS EAEDSLSEGE SMESDDLQGL SKDYVLAGRC HLTEEQEDEI KGFVAKIQPE  240
TPVLVVMMKK TNVNHYPNLV ISKDYAHAYF PHKTQFVTLK LPGKSKAWPC KFRIRPDGRG  300
RNLSLREFVH DNRVKKGDLC LFQPMTEVQS TRFTFMVHLL RKVGRTDICS NQGEDSPSEY  360
ESIQSDHQET SSEVRYILSR RCRLDEEDEV GIDALIAEIQ PEIPLLVVQI MKSNVSGPQP  420
ALVIPKRYAA AHFPTESQNI VLTLPGVKKK WHPLFHVRRG NIGYVLYGRW LEFVRDNRLR  480
EGDICLLQPI NRGEGRRFML TVHLLPKARR AGKSKGGDVV RGSKIGGTST KAASTACVKD  540
EPVDGASDGC DRAGYVVLGC SARLTQEQEK VVAEKVKAVR SRAPIYVAAM DKSNLSSALD  600
LRTTGHAAAD GHLLPDGKQT LTLREAGWSK AWRVEMRHRR MVPAGGWREF AADNRLQAGD  660
LCLLEPVADK RLAMAVHIIR REQCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318791.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLR7WDS40.0R7WDS4_AEGTA; B3 domain-containing protein
STRINGEMT181700.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-09B3 family protein