PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | C3H | ||||||||
Protein Properties | Length: 230aa MW: 23893.2 Da PI: 10.0008 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.8e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck G++C+FaHg+ EMT17685 32 KTRLCNKFNTAEGCKWGNKCHFAHGE 57 9***********************96 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 196 | 221 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC++f + G C +GdrC+FaHg+ EMT17685 196 FKTKLCDNFNK-GSCTFGDRCHFAHGE 221 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-14 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-8 | 29 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.07 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.878 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 6.8E-11 | 100 | 170 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.99 | 101 | 165 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.5E-15 | 101 | 169 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 3.36E-16 | 103 | 197 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 3.70E-14 | 103 | 166 | No hit | No description |
Pfam | PF00013 | 1.5E-11 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-16 | 194 | 226 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.0E-8 | 195 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.943 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-9 | 195 | 225 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 196 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTNLGGPAVS APQGRMPMGP GVPDGPPTPS LKTRLCNKFN TAEGCKWGNK CHFAHGEREL 60 GKPMLLNNSM APPMGPRPNG HFQPPPMPGP DMVPPSTFGA SATAKISVDA SLAGAIIGKG 120 GVNTKHISRM TGAKLAIRDN EADPNHKNIE LEGSFDQVNH ASAMVKELIL RIGGNAPPQA 180 KNPGRGPAGG GGGSNFKTKL CDNFNKGSCT FGDRCHFAHG ESELRKSAAA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355231 | 0.0 | AK355231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1017N10. | |||
GenBank | AK356664 | 0.0 | AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159827.1 | 1e-167 | zinc finger CCCH domain-containing protein 44-like isoform X2 | ||||
Swissprot | Q69XQ3 | 1e-131 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A453SK59 | 1e-166 | A0A453SK59_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453SKQ7 | 1e-166 | A0A453SKQ7_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453SKS6 | 1e-166 | A0A453SKS6_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7WD49 | 1e-166 | R7WD49_AEGTA; Zinc finger CCCH domain-containing protein 44 | ||||
STRING | EMT17685 | 1e-167 | (Aegilops tauschii) | ||||
STRING | Traes_7DL_BC8BA3B78.1 | 1e-166 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-56 | C3H family protein |