 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
EMT17685 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
| Family |
C3H |
| Protein Properties |
Length: 230aa MW: 23893.2 Da PI: 10.0008 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| EMT17685 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.5 | 4.8e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+lC+ f Ck G++C+FaHg+
EMT17685 32 KTRLCNKFNTAEGCKWGNKCHFAHGE 57
9***********************96 PP
|
| 2 | zf-CCCH | 37.9 | 2.9e-12 | 196 | 221 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC++f + G C +GdrC+FaHg+
EMT17685 196 FKTKLCDNFNK-GSCTFGDRCHFAHGE 221
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 3.9E-14 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.88E-8 | 29 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.07 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.878 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.0E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 6.8E-11 | 100 | 170 | IPR004087 | K Homology domain |
| PROSITE profile | PS50084 | 14.99 | 101 | 165 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:3.30.1370.10 | 1.5E-15 | 101 | 169 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 3.36E-16 | 103 | 197 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 3.70E-14 | 103 | 166 | No hit | No description |
| Pfam | PF00013 | 1.5E-11 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
| Gene3D | G3DSA:4.10.1000.10 | 1.5E-16 | 194 | 226 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 9.0E-8 | 195 | 221 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.943 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.19E-9 | 195 | 225 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.8E-10 | 196 | 221 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MTNLGGPAVS APQGRMPMGP GVPDGPPTPS LKTRLCNKFN TAEGCKWGNK CHFAHGEREL 60
GKPMLLNNSM APPMGPRPNG HFQPPPMPGP DMVPPSTFGA SATAKISVDA SLAGAIIGKG 120
GVNTKHISRM TGAKLAIRDN EADPNHKNIE LEGSFDQVNH ASAMVKELIL RIGGNAPPQA 180
KNPGRGPAGG GGGSNFKTKL CDNFNKGSCT FGDRCHFAHG ESELRKSAAA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK355231 | 0.0 | AK355231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1017N10. |
| GenBank | AK356664 | 0.0 | AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23. |
