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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT17604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ERF | ||||||||
Protein Properties | Length: 119aa MW: 12631.8 Da PI: 5.2697 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.3e-19 | 7 | 58 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+++AeIrdp + +r++lg+f+ta+eAa+a+++a+ + +g EMT17604 7 TKYRGVRTRP-WGKFAAEIRDPERG--GARVWLGTFDTAQEAARAYDRAAFAQRG 58 69*****999.**********8333..4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-13 | 7 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-26 | 7 | 66 | No hit | No description |
SMART | SM00380 | 3.8E-31 | 8 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 8 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-23 | 8 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.459 | 8 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MEDDKKTKYR GVRTRPWGKF AAEIRDPERG GARVWLGTFD TAQEAARAYD RAAFAQRGAT 60 AVLNFPGEAG GPSGSSSSAP ARSGAGTGSG RGGTEKIELE YLDDSLLDEL LDDSKYGGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-29 | 8 | 106 | 14 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177807.1 | 1e-79 | ethylene-responsive transcription factor ERF095-like | ||||
Swissprot | Q9LTC5 | 2e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3B5ZTD8 | 3e-78 | A0A3B5ZTD8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452YBG1 | 3e-78 | A0A452YBG1_AEGTS; Uncharacterized protein | ||||
TrEMBL | N1R0D5 | 3e-78 | N1R0D5_AEGTA; Ethylene-responsive transcription factor ERF098 | ||||
STRING | EMT17604 | 5e-79 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 3e-21 | ERF family protein |
Publications ? help Back to Top | |||
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