![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT17540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 235aa MW: 24370.8 Da PI: 8.4231 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.8e-06 | 208 | 230 | 1 | 23 |
--S---SGGGGTS--TTTTT-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkF 23 +k +lC+ f+++ C +G+rC+F EMT17540 208 FKSRLCMSFLAGESCAFGGRCSF 230 689********66*********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 205 | 230 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence Send to blast |
MPHPLSLAPT TQQPIQLHRV CRTRCSDEIH ARQYDGRRDK SLPTAAGTGD STRRGAGLGV 60 GAGGVSFLRT IPLSAAGVGA MAQILVVPPA TMGHVQSSPA AELDLSVEGN LSVPVAAVGA 120 RSASSNCGDM CIGGYRPTNS CNTAAARSSG SAAHMGGSEL YLLVKPKIYL LFCFTSDIHE 180 QAVTKKVNNL DLGGEGELGK AMGPESIFKS RLCMSFLAGE SCAFGGRCSF RPCQS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | R7WCV5 | 1e-171 | R7WCV5_AEGTA; Uncharacterized protein | ||||
STRING | EMT17540 | 1e-171 | (Aegilops tauschii) |